RNAquarium Metadata Server
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contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA380660" and tax_phylum = "Actinomycetota"

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tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 9 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380660 · 9 ✖

analysis 1

  • diamond · 9 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26726435 26726435 PRJNA380660_P_NODE_7321_length_267_cov_3.500000_g6921_i0 PRJNA380660 7321 267 3.5 9.345 Gaiellaceae bacterium 2838783 Bacteria Bacteria 43.5 0.0226   NR HST17223.1 2838783 g6921 i0 52.2 0.51685393258427 46 20 49.4 2 105 236 35 80 HST17223.1 hypothetical protein [Gaiellaceae bacterium] diamond 138 43.5 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales Gaiellaceae   Gaiellaceae bacterium
27818770 27818770 PRJNA380660_P_NODE_8164_length_244_cov_1.572093_g7764_i0 PRJNA380660 8164 244 1.572093 3.83590692 Bacteria 2 Bacteria Bacteria 48.5 3.36e-4   NR WP_347222009.1 39694 g7764 i0 42.9 2.56967213114754 77 36 87.3 2 1 213 232 306 WP_347222009.1 integrin alpha, partial [Mycolicibacterium poriferae] diamond 627 48.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae Mycolicibacterium Mycolicibacterium poriferae
28654086 28654086 PRJNA380660_P_NODE_12387_length_161_cov_1.590909_g11987_i0 PRJNA380660 12387 161 1.590909 2.56136349 Ilumatobacteraceae bacterium 2497619 Bacteria Bacteria 49.3 5.24e-5   NR MCE2764894.1 2497619 g11987 i0 48.1 0.968944099378882 52 26 96.9 1 6 161 68 118 MCE2764894.1 hypothetical protein [Ilumatobacteraceae bacterium] diamond 156 49.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Ilumatobacteraceae   Ilumatobacteraceae bacterium
28654087 28654087 PRJNA380660_P_NODE_3607_length_433_cov_3.995050_g3219_i0 PRJNA380660 3607 433 3.99505 17.2985665 Cryptosporangium aurantiacum 134849 Bacteria Bacteria 43.9 0.0337   NR WP_073266257.1 134849 g3219 i0 30.2 0.665127020785219 96 62 65.8 3 365 81 15 106 WP_073266257.1 Zn-ribbon domain-containing OB-fold protein [Cryptosporangium aurantiacum] diamond 288 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Cryptosporangiales Cryptosporangiaceae Cryptosporangium Cryptosporangium aurantiacum
28797143 28797143 PRJNA380660_P_NODE_8327_length_240_cov_2.184834_g7927_i0 PRJNA380660 8327 240 2.184834 5.2436016 Pseudonocardia 1847 Bacteria Bacteria 45.8 0.00298   NR WP_344418233.1 367279 g7927 i0 43.5 2.875 62 26 67.5 3 79 240 159 219 WP_344418233.1 FAD-dependent oxidoreductase [Pseudonocardia ailaonensis] diamond 690 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia ailaonensis
29397263 29397263 PRJNA380660_P_NODE_4349_length_388_cov_2.069638_g3953_i0 PRJNA380660 4349 388 2.069638 8.03019544 Cyanobacteriota/Melainabacteria group 1798711 Bacteria Bacteria 139 2.0800000000000002e-36   NR WP_378058911.1 2044873 g3953 i0 56.8 11.9922680412371 125 51 95.1 3 12 380 239 362 WP_378058911.1 amino acid adenylation domain-containing protein [Actinophytocola glycyrrhizae] diamond 4653 139 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinophytocola Actinophytocola glycyrrhizae
29807617 29807617 PRJNA380660_P_NODE_11031_length_189_cov_1.606250_g10631_i0 PRJNA380660 11031 189 1.60625 3.0358125 Actinomycetota 201174 Bacteria Bacteria 47.4 2.82e-4   NR MBN2840643.1 2052159 g10631 i0 58.1 1.68253968253968 31 13 49.2 0 96 188 2 32 MBN2840643.1 FABP family protein [Coriobacteriia bacterium] diamond 318 47.8 0.99163179916318 Bacteria   Bacillati Actinomycetota Coriobacteriia       Coriobacteriia bacterium
31592183 31592183 PRJNA380660_P_NODE_7396_length_265_cov_2.364407_g6996_i0 PRJNA380660 7396 265 2.364407 6.26567855 Lawsonella clevelandensis 1528099 Bacteria Bacteria 174 2.48e-53   NR PZP88504.1 1528099 g6996 i0 98.9 2.98867924528302 88 1 99.6 0 264 1 30 117 PZP88504.1 MAG: nucleotide exchange factor GrpE [Lawsonella clevelandensis] diamond 792 174 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Lawsonellaceae Lawsonella Lawsonella clevelandensis
31939829 31939829 PRJNA380660_P_NODE_8217_length_242_cov_4.061033_g7817_i0 PRJNA380660 8217 242 4.061033 9.82769986 Actinomycetota bacterium 2900548 Bacteria Bacteria 75.9 8e-14   NR MCL4449639.1 2900548 g7817 i0 59.6 6.38429752066116 52 21 64.5 0 3 158 132 183 MCL4449639.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase [Actinomycetota bacterium] diamond 1545 75.9 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;