RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where analysis = "diamond", bioproject = "PRJNA380660" and tax_clade = "core chlorophytes"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 9 ✖

bioproject 1

  • PRJNA380660 · 9 ✖

analysis 1

  • diamond · 9 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
24628542 24628542 PRJNA380660_P_NODE_4360_length_387_cov_3.234637_g3964_i0 PRJNA380660 4360 387 3.234637 12.51804519 Volvox reticuliferus 1737510 Plants Plants 155 7.39e-46   NR GIL81710.1 1737510 g3964 i0 69.5 4.11627906976744 105 32 81.4 0 345 31 49 153 GIL81710.1 hypothetical protein Vretifemale_10726, partial [Volvox reticuliferus] diamond 1593 155 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Volvocaceae Volvox Volvox reticuliferus
27629297 27629297 PRJNA380660_P_NODE_8524_length_235_cov_2.174757_g8124_i0 PRJNA380660 8524 235 2.174757 5.11067895 Eukaryota 2759 Plants Plants 79.3 4.34e-15   NR CAD7699278.1 121088 g8124 i0 47.7 9.68936170212766 86 36 98.3 2 2 232 454 539 CAD7699278.1 unnamed protein product [Ostreobium quekettii] diamond 2277 80.1 0.990012484394507 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
27818769 27818769 PRJNA380660_P_NODE_3804_length_419_cov_1.887179_g3413_i0 PRJNA380660 3804 419 1.887179 7.90728001 Coccomyxa 41891 Plants Plants 102 3.62e-22   NR KAK9907561.1 248742 g3413 i0 49.2 3.5727923627685 120 53 85.2 3 396 40 654 766 KAK9907561.1 hypothetical protein WJX75_005977 [Coccomyxa subellipsoidea] diamond 1497 103 0.990291262135922 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa subellipsoidea
29428603 29428603 PRJNA380660_P_NODE_8709_length_231_cov_1.945545_g8309_i0 PRJNA380660 8709 231 1.945545 4.49420895 Chlorellaceae 35461 Plants Plants 64.7 5.17e-10   NR KAG7671833.1 1650286 g8309 i0 50.9 2.64935064935065 53 26 68.8 0 27 185 138 190 KAG7671833.1 hypothetical protein KSW81_004719 [Chlorella desiccata (nom. nud.)] diamond 612 64.7 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Nannochloris Nannochloris sp. 'desiccata'
29776026 29776026 PRJNA380660_P_NODE_11371_length_182_cov_1.725490_g10971_i0 PRJNA380660 11371 182 1.72549 3.1403918 Eukaryota 2759 Plants Plants 87.8 2.93e-19   NR XAI67168.1 3171 g10971 i0 68.9 9.85714285714286 61 18 98.9 1 181 2 134 194 XAI67168.1 cytochrome c oxidase subunit 2 [Myrmecia israelensis] diamond 1794 87.8 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Myrmecia Myrmecia israelensis
31844950 31844950 PRJNA380660_P_NODE_4077_length_404_cov_2.125333_g3682_i0 PRJNA380660 4077 404 2.125333 8.58634532 Picochlorum sp. BPE23 2696299 Plants Plants 56.6 3.05e-6   NR KAI8114626.1 2696299 g3682 i0 36 1.46287128712871 111 63 80.9 4 8 334 383 487 KAI8114626.1 hypothetical protein M9434_002746 [Picochlorum sp. BPE23] diamond 591 56.6 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23
32256736 32256736 PRJNA380660_P_NODE_6418_length_297_cov_2.003731_g6018_i0 PRJNA380660 6418 297 2.003731 5.95108107 Ostreobium quekettii 121088 Plants Plants 55.5 2.38e-6   NR CAD7699335.1 121088 g6018 i0 35.6 1.75757575757576 104 53 96 4 297 13 393 491 CAD7699335.1 unnamed protein product [Ostreobium quekettii] diamond 522 55.5 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
32478064 32478064 PRJNA380660_P_NODE_5039_length_352_cov_2.328173_g4641_i0 PRJNA380660 5039 352 2.328173 8.19516896 Monoraphidium minutum 39955 Plants Plants 77 2.97e-14   NR KAI8471578.1 39955 g4641 i0 42 1.3125 81 47 69 0 317 75 113 193 KAI8471578.1 MAG: thioredoxin-like protein [Monoraphidium minutum] diamond 462 77 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Sphaeropleales Selenastraceae Monoraphidium Monoraphidium minutum
32541392 32541392 PRJNA380660_P_NODE_10599_length_197_cov_1.833333_g10199_i0 PRJNA380660 10599 197 1.833333 3.61166601 Picochlorum sp. BPE23 2696299 Plants Plants 87.4 3.63e-18   NR KAI8102667.1 2696299 g10199 i0 72.3 2.93908629441624 65 17 99 1 197 3 372 435 KAI8102667.1 hypothetical protein M9434_005466 [Picochlorum sp. BPE23] diamond 579 87.4 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae     Picochlorum Picochlorum sp. BPE23

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;