RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA380416" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA380416 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
22078545 22078545 PRJNA380416_P_NODE_12758_length_164_cov_0.886957_g12611_i0 PRJNA380416 12758 164 0.886957 1.45460948 Naegleria 5761 Heterolobosea other_Eukaryota 95.5 6.81e-23   NR XP_044556203.1 5763 g12611 i0 81.5 3.95121951219512 54 10 98.8 0 164 3 45 98 XP_044556203.1 uncharacterized protein FDP41_010219 [Naegleria fowleri] diamond 648 95.5 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
26758385 26758385 PRJNA380416_P_NODE_12241_length_165_cov_0.879310_g12094_i0 PRJNA380416 12241 165 0.87931 1.4508615 Acrasis kona 1008807 Heterolobosea other_Eukaryota 51.6 9.54e-6   NR KAL0482923.1 1008807 g12094 i0 45.6 1.03636363636364 57 28 98.2 1 3 164 817 873 KAL0482923.1 acetyl-CoA carboxylase [Acrasis kona] diamond 171 51.6 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
27959383 27959383 PRJNA380416_P_NODE_12125_length_165_cov_0.879310_g11978_i0 PRJNA380416 12125 165 0.87931 1.4508615 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 91.3 1.06e-19   NR XP_044548617.1 51637 g11978 i0 72.7 1 55 14 98.2 1 165 4 222 276 XP_044548617.1 uncharacterized protein C9374_004905 [Naegleria lovaniensis] diamond 165 91.3 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;