RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

16 rows where analysis = "diamond", bioproject = "PRJNA380416" and tax_phylum = "Chordata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Chordata · 16 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA380416 · 16 ✖

analysis 1

  • diamond · 16 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27548876 27548876 PRJNA380416_P_NODE_13884_length_161_cov_0.910714_g13737_i0 PRJNA380416 13884 161 0.910714 1.46624954 Staurois parvus 386267 Chordata Chordata 63.9 1.72e-11   NR CAI9618505.1 386267 g13737 i0 67.6 1.37888198757764 37 12 68.9 0 50 160 7 43 CAI9618505.1 unnamed protein product, partial [Staurois parvus] diamond 222 63.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
28085629 28085629 PRJNA380416_P_NODE_6925_length_218_cov_1.254438_g6778_i0 PRJNA380416 6925 218 1.254438 2.73467484 Hyperolius riggenbachi 752182 Chordata Chordata 45.4 0.00197   NR XP_068103809.1 752182 g6778 i0 70 0.412844036697248 30 9 41.3 0 124 213 1 30 XP_068103809.1 zinc finger protein 418-like [Hyperolius riggenbachi] diamond 90 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hyperoliidae Hyperolius Hyperolius riggenbachi
28180222 28180222 PRJNA380416_P_NODE_13606_length_162_cov_0.902655_g13459_i0 PRJNA380416 13606 162 0.902655 1.4623011 Lipotes vexillifer 118797 Chordata Chordata 46.6 1.49e-4   NR XP_007466294.1 118797 g13459 i0 73.1 0.481481481481481 26 7 48.1 0 21 98 35 60 XP_007466294.1 PREDICTED: LOW QUALITY PROTEIN: putative viral protein-binding protein C1-like [Lipotes vexillifer] diamond 78 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Lipotidae Lipotes Lipotes vexillifer
28260417 28260417 PRJNA380416_P_NODE_12786_length_164_cov_0.886957_g12639_i0 PRJNA380416 12786 164 0.886957 1.45460948 Chordata 7711 Chordata Chordata 59.3 1.82e-8   NR XP_036899618.1 192404 g12639 i0 49 8.14024390243902 51 26 93.3 0 160 8 2475 2525 XP_036899618.1 dynein heavy chain 7, axonemal [Sturnira hondurensis] diamond 1335 59.7 0.993299832495812 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Phyllostomidae Sturnira Sturnira hondurensis
28450211 28450211 PRJNA380416_P_NODE_12626_length_164_cov_0.886957_g12479_i0 PRJNA380416 12626 164 0.886957 1.45460948 Rodentia 9989 Chordata Chordata 61.6 2.05e-9   NR VTJ66147.1 9995 g12479 i0 51.9 2.85365853658537 52 25 95.1 0 164 9 166 217 VTJ66147.1 Hypothetical predicted protein [Marmota monax] diamond 468 62 0.993548387096774 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Marmota Marmota monax
28702746 28702746 PRJNA380416_P_NODE_11627_length_166_cov_0.871795_g11480_i0 PRJNA380416 11627 166 0.871795 1.4471797 Chordata 7711 Chordata Chordata 61.2 3.94e-9   NR XP_040388086.1 8869 g11480 i0 100 73.1927710843374 30 0 54.2 0 166 77 555 584 XP_040388086.1 T-complex protein 1 subunit zeta isoform X1 [Cygnus olor] diamond 12150 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Anseriformes Anatidae Cygnus Cygnus olor
28811598 28811598 PRJNA380416_P_NODE_13988_length_161_cov_0.910714_g13841_i0 PRJNA380416 13988 161 0.910714 1.46624954 Staurois parvus 386267 Chordata Chordata 53.5 1.01e-7   NR CAI9540006.1 386267 g13841 i0 57.9 0.708074534161491 38 16 70.8 0 35 148 1 38 CAI9540006.1 unnamed protein product, partial [Staurois parvus] diamond 114 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29050061 29050061 PRJNA380416_P_NODE_14348_length_150_cov_5.009901_g14201_i0 PRJNA380416 14348 150 5.009901 7.5148515 root 1 Root_unresolved Root_unresolved 40.8 0.0496   NR XP_040210338.1 8407 g14201 i0 50 1.76 38 18 76 1 28 141 194 230 XP_040210338.1 POU domain, class 6, transcription factor 2-like [Rana temporaria] diamond 264 40.8 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Rana Rana temporaria
29159431 29159431 PRJNA380416_P_NODE_11029_length_169_cov_0.950000_g10882_i0 PRJNA380416 11029 169 0.95 1.6055 Ranitomeya imitator 111125 Chordata Chordata 45.4 0.0015   NR CAJ0952439.1 111125 g10882 i0 43.4 1.86390532544379 53 30 94.1 0 161 3 656 708 CAJ0952439.1 unnamed protein product [Ranitomeya imitator] diamond 315 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29159433 29159433 PRJNA380416_P_NODE_13489_length_162_cov_0.902655_g13342_i0 PRJNA380416 13489 162 0.902655 1.4623011 Ranitomeya imitator 111125 Chordata Chordata 45.1 0.0018600000000000001   NR CAJ0963020.1 111125 g13342 i0 51.4 1.7962962962963 35 17 64.8 0 3 107 11 45 CAJ0963020.1 unnamed protein product [Ranitomeya imitator] diamond 291 45.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
29348776 29348776 PRJNA380416_P_NODE_13649_length_162_cov_0.646018_g13502_i0 PRJNA380416 13649 162 0.646018 1.04654916 Staurois parvus 386267 Chordata Chordata 70.5 4.42e-14   NR CAI9547784.1 386267 g13502 i0 54.7 0.981481481481482 53 24 98.1 0 3 161 31 83 CAI9547784.1 unnamed protein product, partial [Staurois parvus] diamond 159 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29664045 29664045 PRJNA380416_P_NODE_11070_length_168_cov_1.705882_g10923_i0 PRJNA380416 11070 168 1.705882 2.86588176 Dryobates pubescens 118200 Chordata Chordata 56.2 4.3e-8   NR KFV61095.1 118200 g10923 i0 52.2 0.821428571428571 46 20 78.6 1 137 6 25 70 KFV61095.1 hypothetical protein N307_11170, partial [Dryobates pubescens] diamond 138 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Aves Piciformes Picidae Dryobates Dryobates pubescens
29948696 29948696 PRJNA380416_P_NODE_5451_length_249_cov_1.045000_g5304_i0 PRJNA380416 5451 249 1.045 2.60205 Ranitomeya imitator 111125 Chordata Chordata 56.2 6.99e-7   NR CAJ0920470.1 111125 g5304 i0 68.4 0.91566265060241 38 12 45.8 0 2 115 709 746 CAJ0920470.1 unnamed protein product [Ranitomeya imitator] diamond 228 56.2 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
30628954 30628954 PRJNA380416_P_NODE_11353_length_167_cov_0.864407_g11206_i0 PRJNA380416 11353 167 0.864407 1.44355969 Opisthokonta 33154 Chordata Chordata 97.4 1.04e-22   NR NP_001104213.1 8355 g11206 i0 90.9 39.5209580838323 55 5 98.8 0 1 165 7 61 NP_001104213.1 uncharacterized protein LOC100126642 [Xenopus laevis] diamond 6600 97.8 0.995910020449898 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis
31148819 31148819 PRJNA380416_P_NODE_12175_length_165_cov_0.879310_g12028_i0 PRJNA380416 12175 165 0.87931 1.4508615 Sciurus carolinensis 30640 Chordata Chordata 45.4 0.00144   NR MBZ3891560.1 30640 g12028 i0 54.7 2.85454545454545 53 24 96.4 0 161 3 235 287 MBZ3891560.1 Neuron navigator 2 [Sciurus carolinensis] diamond 471 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Sciuridae Sciurus Sciurus carolinensis
31844942 31844942 PRJNA380416_P_NODE_13797_length_161_cov_0.910714_g13650_i0 PRJNA380416 13797 161 0.910714 1.46624954 Branchiostoma belcheri 7741 Chordata Chordata 58.2 4.2e-8   NR XP_019641040.1 7741 g13650 i0 57.9 1.41614906832298 38 16 70.8 0 143 30 115 152 XP_019641040.1 PREDICTED: WD repeat-containing protein 31-like [Branchiostoma belcheri] diamond 228 58.2 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma belcheri

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;