RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA380416" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA380416 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28843312 28843312 PRJNA380416_P_NODE_13048_length_163_cov_0.894737_g12901_i0 PRJNA380416 13048 163 0.894737 1.45842131 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 40 0.039   NR MCM8775284.1 2035772 g12901 i0 41.5 0.754601226993865 41 23 73.6 1 6 125 15 55 MCM8775284.1 4Fe-4S binding protein [Candidatus Omnitrophota bacterium] diamond 123 40 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30675191 30675191 PRJNA380416_P_NODE_11393_length_167_cov_0.864407_g11246_i0 PRJNA380416 11393 167 0.864407 1.44355969 Phycisphaerales bacterium 2052180 Bacteria Bacteria 83.2 1.06e-17   NR MBC7771978.1 2052180 g11246 i0 67.3 0.988023952095808 55 18 98.8 0 167 3 133 187 MBC7771978.1 succinylglutamate desuccinylase/aspartoacylase family protein [Phycisphaerales bacterium] diamond 165 83.2 1 Bacteria PVC group Pseudomonadati Planctomycetota Phycisphaerae Phycisphaerales     Phycisphaerales bacterium
32792914 32792914 PRJNA380416_P_NODE_6380_length_227_cov_2.865169_g6233_i0 PRJNA380416 6380 227 2.865169 6.50393363 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 119 1.26e-30   NR RYD65414.1 2026800 g6233 i0 81.3 0.991189427312775 75 14 99.1 0 225 1 66 140 RYD65414.1 MAG: hypothetical protein EOP84_31955 [Verrucomicrobiaceae bacterium] diamond 225 119 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;