RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA380416" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA380416 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
31338894 31338894 PRJNA380416_P_NODE_12196_length_165_cov_0.879310_g12049_i0 PRJNA380416 12196 165 0.87931 1.4508615 Patescibacteria group bacterium 2052139 Bacteria Bacteria 69.7 3.91e-12   NR MEK7526242.1 2052139 g12049 i0 68.8 0.872727272727273 48 15 87.3 0 5 148 349 396 MEK7526242.1 PBP1A family penicillin-binding protein [Patescibacteria group bacterium] diamond 144 69.7 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
31813415 31813415 PRJNA380416_P_NODE_9957_length_180_cov_1.549618_g9810_i0 PRJNA380416 9957 180 1.549618 2.7893124 Patescibacteria group bacterium 2052139 Bacteria Bacteria 107 5.55e-26   NR MCL4419852.1 2052139 g9810 i0 83.1 1.96666666666667 59 10 98.3 0 3 179 92 150 MCL4419852.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase [Patescibacteria group bacterium] diamond 354 107 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;