RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA380129" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA380129 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2952630 2952630 PRJNA380129_P_NODE_3363_length_222_cov_1.803109_g3039_i0 PRJNA380129 3363 222 1.803109 4.00290198 FCB group 1783270 Bacteria Bacteria 125 1.13e-32   NR WP_247176211.1 562 g3039 i0 79.2 91.5 72 15 97.3 0 221 6 75 146 WP_247176211.1 polysaccharide biosynthesis protein [Escherichia coli] diamond 20313 126 0.992063492063492 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
28338356 28338356 PRJNA380129_P_NODE_3346_length_227_cov_1.515152_g3022_i0 PRJNA380129 3346 227 1.515152 3.43939504 Holosporales bacterium 2053559 Bacteria Bacteria 55.8 2.58e-7   NR HCI48806.1 2053559 g3022 i0 50 0.740088105726872 56 28 74 0 175 8 27 82 HCI48806.1 hypothetical protein [Holosporales bacterium] diamond 168 55.8 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Holosporales     Holosporales bacterium
29538035 29538035 PRJNA380129_P_NODE_3130_length_307_cov_3.244604_g2806_i0 PRJNA380129 3130 307 3.244604 9.96093428 Caulobacteraceae bacterium 1978230 Bacteria Bacteria 43.5 0.0408   NR MDB5480411.1 1978230 g2806 i0 33.3 0.527687296416938 54 33 52.8 1 222 61 194 244 MDB5480411.1 putative cytochrome c1 signal peptide protein [Caulobacteraceae bacterium] diamond 162 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae   Caulobacteraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;