RNAquarium Metadata Server
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contig_metadata

8 rows where analysis = "diamond", bioproject = "PRJNA380129" and tax_kingdom = "Pseudomonadati"

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tax_superkingdom 1

tax_kingdom 1

  • Pseudomonadati · 8 ✖

tax_clade 1

bioproject 1

  • PRJNA380129 · 8 ✖

analysis 1

  • diamond · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2952630 2952630 PRJNA380129_P_NODE_3363_length_222_cov_1.803109_g3039_i0 PRJNA380129 3363 222 1.803109 4.00290198 FCB group 1783270 Bacteria Bacteria 125 1.13e-32   NR WP_247176211.1 562 g3039 i0 79.2 91.5 72 15 97.3 0 221 6 75 146 WP_247176211.1 polysaccharide biosynthesis protein [Escherichia coli] diamond 20313 126 0.992063492063492 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Escherichia Escherichia coli
27264730 27264730 PRJNA380129_P_NODE_1323_length_507_cov_2.119247_g1006_i0 PRJNA380129 1323 507 2.119247 10.74458229 Bacteroidota bacterium 1898104 Bacteria Bacteria 72.4 9.99e-13   NR MES2875510.1 1898104 g1006 i0 42.5 0.473372781065089 80 46 47.3 0 49 288 1 80 MES2875510.1 hypothetical protein [Bacteroidota bacterium] diamond 240 72.4 1 Bacteria FCB group Pseudomonadati Bacteroidota         Bacteroidota bacterium
28338356 28338356 PRJNA380129_P_NODE_3346_length_227_cov_1.515152_g3022_i0 PRJNA380129 3346 227 1.515152 3.43939504 Holosporales bacterium 2053559 Bacteria Bacteria 55.8 2.58e-7   NR HCI48806.1 2053559 g3022 i0 50 0.740088105726872 56 28 74 0 175 8 27 82 HCI48806.1 hypothetical protein [Holosporales bacterium] diamond 168 55.8 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Holosporales     Holosporales bacterium
28748758 28748758 PRJNA380129_P_NODE_1447_length_473_cov_5.752252_g1127_i0 PRJNA380129 1447 473 5.752252 27.20815196 Spirochaetia bacterium 2053615 Bacteria Bacteria 187 2.2999999999999998e-55   NR TRZ64495.1 2053615 g1127 i0 57.1 0.976744186046512 154 52 88.8 1 472 53 138 291 TRZ64495.1 MAG: hypothetical protein D4Q79_01425 [Spirochaetia bacterium] diamond 462 187 1 Bacteria   Pseudomonadati Spirochaetota Spirochaetia       Spirochaetia bacterium
28938321 28938321 PRJNA380129_P_NODE_3368_length_220_cov_3.717277_g3044_i0 PRJNA380129 3368 220 3.717277 8.1780094 Bdellovibrionales bacterium CG1 2053517 Bacteria Bacteria 70.9 1.88e-12   NR PIU00040.1 1973927 g3044 i0 59.3 0.804545454545455 59 24 80.5 0 219 43 199 257 PIU00040.1 MAG: hypothetical protein COT74_06735 [Bdellovibrionales bacterium CG10_big_fil_rev_8_21_14_0_10_45_34] diamond 177 70.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium CG10_big_fil_rev_8_21_14_0_10_45_34
29159430 29159430 PRJNA380129_P_NODE_3669_length_156_cov_2.661417_g3345_i0 PRJNA380129 3669 156 2.661417 4.15181052 Bryobacterales bacterium 2026791 Bacteria Bacteria 41.6 0.00881   NR MCU1326627.1 2026791 g3345 i0 62.5 0.461538461538462 24 9 46.2 0 156 85 57 80 MCU1326627.1 hypothetical protein [Bryobacterales bacterium] diamond 72 41.6 1 Bacteria   Pseudomonadati Acidobacteriota Terriglobia Bryobacterales     Bryobacterales bacterium
29538035 29538035 PRJNA380129_P_NODE_3130_length_307_cov_3.244604_g2806_i0 PRJNA380129 3130 307 3.244604 9.96093428 Caulobacteraceae bacterium 1978230 Bacteria Bacteria 43.5 0.0408   NR MDB5480411.1 1978230 g2806 i0 33.3 0.527687296416938 54 33 52.8 1 222 61 194 244 MDB5480411.1 putative cytochrome c1 signal peptide protein [Caulobacteraceae bacterium] diamond 162 43.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Caulobacterales Caulobacteraceae   Caulobacteraceae bacterium
30439773 30439773 PRJNA380129_P_NODE_3193_length_284_cov_2.372549_g2869_i0 PRJNA380129 3193 284 2.372549 6.73803916 root 1 Root_unresolved Root_unresolved 92.4 2.1e-19   NR HKU51007.1 70125 g2869 i0 48.4 1.96478873239437 93 48 98.2 0 1 279 296 388 HKU51007.1 DNA polymerase [Nitrospira sp.] diamond 558 92.4 1 Bacteria   Pseudomonadati Nitrospirota Nitrospiria Nitrospirales Nitrospiraceae Nitrospira Nitrospira sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;