RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA380129" and tax_kingdom = "Bacillati"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA380129 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27264731 27264731 PRJNA380129_P_NODE_3183_length_287_cov_4.457364_g2859_i0 PRJNA380129 3183 287 4.457364 12.79263468 Vampirovibrionales bacterium 2692181 Bacteria Bacteria 50.1 1.45e-4   NR MEB3286183.1 2692181 g2859 i0 50.8 0.679442508710801 65 30 65.9 2 73 261 175 239 MEB3286183.1 hypothetical protein [Vampirovibrionales bacterium] diamond 195 50.1 1 Bacteria Cyanobacteriota/Melainabacteria group Bacillati Candidatus Melainabacteria Vampirovibriophyceae Vampirovibrionales     Vampirovibrionales bacterium
28875048 28875048 PRJNA380129_P_NODE_3068_length_336_cov_4.677524_g2744_i0 PRJNA380129 3068 336 4.677524 15.71648064 Chloroflexota bacterium 2026724 Bacteria Bacteria 73.6 8.97e-14   NR MBI2954900.1 2026724 g2744 i0 40.4 1.66964285714286 94 55 83.9 1 53 334 61 153 MBI2954900.1 hypothetical protein [Chloroflexota bacterium] diamond 561 73.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium
30454419 30454419 PRJNA380129_P_NODE_3393_length_212_cov_1.519126_g3069_i0 PRJNA380129 3393 212 1.519126 3.22054712 Chloroflexota bacterium 2026724 Bacteria Bacteria 73.6 3.46e-13   NR MEO8608317.1 2026724 g3069 i0 68.5 0.764150943396226 54 17 76.4 0 2 163 880 933 MEO8608317.1 LAGLIDADG family homing endonuclease [Chloroflexota bacterium] diamond 162 73.6 1 Bacteria   Bacillati Chloroflexota         Chloroflexota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;