RNAquarium Metadata Server
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contig_metadata

14 rows where analysis = "diamond", bioproject = "PRJNA379145" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 14 ✖

tax_clade 1

bioproject 1

  • PRJNA379145 · 14 ✖

analysis 1

  • diamond · 14 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1675628 1675628 PRJNA379145_P_NODE_44822_length_265_cov_2.060345_g42670_i0 PRJNA379145 44822 265 2.060345 5.45991425 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 60.8 1.91e-8   NR XP_067775339.1 135588 g42670 i0 41 7.07547169811321 83 42 94 1 263 15 229 304 XP_067775339.1 TKL family protein kinase [Histomonas meleagridis] diamond 1875 61.2 0.993464052287582 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
26726326 26726326 PRJNA379145_P_NODE_14961_length_737_cov_2.393466_g13354_i0 PRJNA379145 14961 737 2.393466 17.63984442 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 48.1 0.00113   NR XP_001579255.1 412133 g13354 i0 50 0.187245590230665 46 20 18.7 1 221 358 4 46 XP_001579255.1 associate of C-MYC AMY-1 family [Trichomonas vaginalis G3] diamond 138 48.1 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27517392 27517392 PRJNA379145_P_NODE_73963_length_150_cov_2.752137_g71808_i0 PRJNA379145 73963 150 2.752137 4.1282055 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 70.5 1.68e-12   NR XP_067775916.1 135588 g71808 i0 57.1 1.96 49 21 98 0 2 148 1064 1112 XP_067775916.1 Coatomer, alpha subunit [Histomonas meleagridis] diamond 294 70.5 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
27864501 27864501 PRJNA379145_P_NODE_25725_length_483_cov_3.051111_g23678_i0 PRJNA379145 25725 483 3.051111 14.73686613 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 58.9 9.79e-7   NR XP_001324945.1 412133 g23678 i0 31.5 0.68944099378882 111 75 68.9 1 90 422 97 206 XP_001324945.1 uncharacterized protein TVAGG3_0507240 [Trichomonas vaginalis G3] diamond 333 58.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28685747 28685747 PRJNA379145_P_NODE_29747_length_420_cov_1.589147_g27632_i0 PRJNA379145 29747 420 1.589147 6.6744174 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 50.1 7.3e-4   NR XP_068362867.1 1144522 g27632 i0 45 0.428571428571429 60 20 40.7 4 227 57 2953 3002 XP_068362867.1 uncharacterized protein TRFO_21244 [Tritrichomonas foetus] diamond 180 50.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
28717186 28717186 PRJNA379145_P_NODE_21787_length_556_cov_2.321224_g19853_i0 PRJNA379145 21787 556 2.321224 12.90600544 Histomonas meleagridis 135588 Parabasalia other_Eukaryota 93.2 2.21e-18   NR XP_067777754.1 135588 g19853 i0 50 0.453237410071942 84 41 45.3 1 228 479 429 511 XP_067777754.1 FYVE-type zinc finger-containing protein [Histomonas meleagridis] diamond 252 93.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
28843222 28843222 PRJNA379145_P_NODE_15348_length_724_cov_1.800289_g13715_i0 PRJNA379145 15348 724 1.800289 13.03409236 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 61.2 1.44e-7   NR XP_001582059.1 412133 g13715 i0 46.6 0.302486187845304 73 39 30.2 0 246 28 62 134 XP_001582059.1 RNA polymerase II transcription regulator recruiting protein [Trichomonas vaginalis G3] diamond 219 61.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30738347 30738347 PRJNA379145_P_NODE_40174_length_301_cov_3.638060_g38023_i0 PRJNA379145 40174 301 3.63806 10.9505606 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 80.5 3.44e-17   NR XP_001580982.1 412133 g38023 i0 60.3 1.18604651162791 58 23 57.8 0 253 80 4 61 XP_001580982.1 translational elongation [Trichomonas vaginalis G3] diamond 357 80.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
30850256 30850256 PRJNA379145_P_NODE_50454_length_231_cov_1.636364_g48300_i0 PRJNA379145 50454 231 1.636364 3.78000084 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 73.9 2.64e-13   NR XP_067773532.1 135588 g48300 i0 48.5 16.8181818181818 68 26 88.3 1 10 213 171 229 XP_067773532.1 CAMK family protein kinase [Histomonas meleagridis] diamond 3885 73.9 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
31022888 31022888 PRJNA379145_P_NODE_51755_length_224_cov_1.696335_g49601_i0 PRJNA379145 51755 224 1.696335 3.7997904 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 73.9 3.73e-14   NR XP_001323614.1 412133 g49601 i0 51.9 2.0625 77 34 99.1 1 223 2 75 151 XP_001323614.1 GTPase protein [Trichomonas vaginalis G3] diamond 462 73.9 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
31275572 31275572 PRJNA379145_P_NODE_21715_length_557_cov_6.026718_g19783_i0 PRJNA379145 21715 557 6.026718 33.56881926 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.34e-61   NR XP_068360038.1 1144522 g19783 i0 57.2 7.49730700179533 173 74 93.2 0 25 543 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 4176 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
32129914 32129914 PRJNA379145_P_NODE_21358_length_565_cov_2.112782_g19449_i0 PRJNA379145 21358 565 2.112782 11.9372183 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 94 1.71e-18   NR XP_001304482.1 412133 g19449 i0 32.6 0.961061946902655 181 115 92.4 4 553 32 352 532 XP_001304482.1 ubiquitinyl hydrolase protein [Trichomonas vaginalis G3] diamond 543 94 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32446412 32446412 PRJNA379145_P_NODE_54559_length_211_cov_1.213483_g52405_i0 PRJNA379145 54559 211 1.213483 2.56044913 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 58.2 2.47e-8   NR XP_001307659.1 412133 g52405 i0 43.5 0.981042654028436 69 38 96.7 1 209 6 71 139 XP_001307659.1 RNA polymerase II transcription regulator recruiting protein [Trichomonas vaginalis G3] diamond 207 58.2 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
32541308 32541308 PRJNA379145_P_NODE_28079_length_445_cov_1.781553_g25988_i0 PRJNA379145 28079 445 1.781553 7.92791085 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 51.6 2.36e-4   NR XP_001317072.1 412133 g25988 i0 47.5 0.41123595505618 61 27 38.4 2 255 425 528 587 XP_001317072.1 protein ubiquitination [Trichomonas vaginalis G3] diamond 183 51.6 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;