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contig_metadata

13 rows where analysis = "diamond", bioproject = "PRJNA379145" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 13 ✖

bioproject 1

  • PRJNA379145 · 13 ✖

analysis 1

  • diamond · 13 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11277251 11277251 PRJNA379145_P_NODE_54669_length_210_cov_1.824859_g52515_i0 PRJNA379145 54669 210 1.824859 3.8322039 delta/epsilon subdivisions 68525 Bacteria Bacteria 104 3.59e-24   NR OIP40594.1 1805126 g52515 i0 62.7 36.3857142857143 67 25 95.7 0 8 208 370 436 OIP40594.1 MAG: 2-oxoglutarate dehydrogenase E1 component [Deltaproteobacteria bacterium CG2_30_63_29] diamond 7641 104 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG2_30_63_29
22077671 22077671 PRJNA379145_P_NODE_718_length_2663_cov_8.373004_g598_i0 PRJNA379145 718 2663 8.373004 222.97309652 SAR324 cluster bacterium 2024889 Bacteria Bacteria 965 0   NR MBF0287513.1 2024889 g598 i0 57 1.84866691701089 823 352 92.6 2 2532 67 4 825 MBF0287513.1 glycogen/starch/alpha-glucan phosphorylase [SAR324 cluster bacterium] diamond 4923 965 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
24626909 24626909 PRJNA379145_P_NODE_20220_length_590_cov_8.922801_g18346_i0 PRJNA379145 20220 590 8.922801 52.6445259 SAR324 cluster bacterium 2024889 Bacteria Bacteria 188 5.72e-57   NR MBF0289824.1 2024889 g18346 i0 52.6 4.89152542372881 192 82 97.6 3 585 10 1 183 MBF0289824.1 riboflavin synthase subunit alpha [SAR324 cluster bacterium] diamond 2886 188 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
26631835 26631835 PRJNA379145_P_NODE_6741_length_1173_cov_2.352632_g5922_i1 PRJNA379145 6741 1173 2.352632 27.59637336 SAR324 cluster bacterium 2024889 Bacteria Bacteria 303 1.0599999999999999e-95   NR MBF0350779.1 2024889 g5922 i1 45.4 5.9923273657289 335 179 85.2 3 1122 124 97 429 MBF0350779.1 threonine synthase [SAR324 cluster bacterium] diamond 7029 303 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
27534410 27534410 PRJNA379145_P_NODE_4703_length_1370_cov_7.054600_g4121_i0 PRJNA379145 4703 1370 7.0546 96.64802 Bradymonadales 1779134 Bacteria Bacteria 540 2.7199999999999998e-188   NR WP_141197284.1 2292766 g4121 i0 64.6 3.57591240875912 407 135 89.1 2 138 1358 7 404 WP_141197284.1 M20/M25/M40 family metallo-hydrolase [Persicimonas caeni] diamond 4899 541 0.99815157116451 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni
27565815 27565815 PRJNA379145_P_NODE_9384_length_988_cov_2.385340_g8288_i0 PRJNA379145 9384 988 2.38534 23.5671592 Bdellovibrionota 3018035 Bacteria Bacteria 139 7.91e-34   NR MDX2470420.1 2024889 g8288 i0 56.6 1.63056680161943 129 54 38.6 1 383 3 298 426 MDX2470420.1 cyclic nucleotide-binding domain-containing protein [SAR324 cluster bacterium] diamond 1611 139 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
28306679 28306679 PRJNA379145_P_NODE_37106_length_330_cov_1.622896_g34956_i0 PRJNA379145 37106 330 1.622896 5.3555568 Lujinxingia sediminis 2480984 Bacteria Bacteria 94.4 7.91e-20   NR WP_127780369.1 2480984 g34956 i0 46 6.16363636363636 100 54 90.9 0 14 313 93 192 WP_127780369.1 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein [Lujinxingia sediminis] diamond 2034 94.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae Lujinxingia Lujinxingia sediminis
28401379 28401379 PRJNA379145_P_NODE_30926_length_403_cov_2.737838_g28799_i0 PRJNA379145 30926 403 2.737838 11.03348714 Deltaproteobacteria bacterium HGW-Deltaproteobacteria-7 2013757 Bacteria Bacteria 120 1.32e-30   NR PKN10507.1 2013757 g28799 i0 52.5 1.77915632754342 118 50 84.9 5 402 61 123 238 PKN10507.1 MAG: hypothetical protein CVU72_00980 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-7] diamond 717 120 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-7
29144970 29144970 PRJNA379145_P_NODE_27189_length_458_cov_3.134118_g25120_i0 PRJNA379145 27189 458 3.134118 14.35426044 Bdellovibrionota 3018035 Bacteria Bacteria 107 2.9199999999999998e-24   NR MDX2470420.1 2024889 g25120 i0 56.7 2.11572052401747 104 43 66.8 1 306 1 298 401 MDX2470420.1 cyclic nucleotide-binding domain-containing protein [SAR324 cluster bacterium] diamond 969 108 0.990740740740741 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
29681061 29681061 PRJNA379145_P_NODE_11250_length_889_cov_2.325935_g9970_i0 PRJNA379145 11250 889 2.325935 20.67756215 Myxococcota 2818505 Bacteria Bacteria 285 2.87e-92   NR PKN64178.1 2013742 g9970 i0 63.4 7.83914510686164 232 73 74.6 3 58 720 14 244 PKN64178.1 MAG: enoyl-CoA hydratase [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15] diamond 6969 287 0.993031358885017 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium HGW-Deltaproteobacteria-15
29965700 29965700 PRJNA379145_P_NODE_10231_length_940_cov_2.012128_g9062_i0 PRJNA379145 10231 940 2.012128 18.9140032 Thermodesulfobacteriota 200940 Bacteria Bacteria 255 3.05e-79   NR CAB1059390.1 698986 g9062 i0 45.3 6.89042553191489 307 159 95.7 5 40 939 47 351 CAB1059390.1 low-specificity D-threonine aldolase [Olavius sp. associated proteobacterium Delta 1] diamond 6477 255 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Olavius sp. associated proteobacterium Delta 1
30502783 30502783 PRJNA379145_P_NODE_25333_length_490_cov_1.724289_g23298_i0 PRJNA379145 25333 490 1.724289 8.4490161 Myxococcota 2818505 Bacteria Bacteria 126 2.76e-33   NR MCS5552965.1 2024889 g23298 i0 47.7 4.9469387755102 130 62 79.6 1 448 59 19 142 MCS5552965.1 CoA pyrophosphatase [SAR324 cluster bacterium] diamond 2424 127 0.992125984251969 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium
32855940 32855940 PRJNA379145_P_NODE_17920_length_646_cov_31.923328_g16146_i0 PRJNA379145 17920 646 31.923328 206.22469888 Persicimonas caeni 2292766 Bacteria Bacteria 185 2.849999999999999e-55   NR WP_141200113.1 2292766 g16146 i0 53.7 0.882352941176471 190 78 88.2 4 20 589 1 180 WP_141200113.1 cupin domain-containing protein [Persicimonas caeni] diamond 570 185 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;