RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA376117" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA376117 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27074859 27074859 PRJNA376117_P_NODE_29162_length_268_cov_1.471795_g28860_i0 PRJNA376117 29162 268 1.471795 3.9444106 Candidatus Neptunochlamydia vexilliferae 1651774 Bacteria Bacteria 57 4.36e-7   NR WP_194846953.1 1651774 g28860 i0 40.7 0.66044776119403 59 35 66 0 48 224 244 302 WP_194846953.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase [Candidatus Neptunochlamydia vexilliferae] diamond 177 57 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Simkaniaceae Candidatus Neptunichlamydia Candidatus Neptunichlamydia vexilliferae
30628901 30628901 PRJNA376117_P_NODE_30673_length_262_cov_1.629630_g30371_i0 PRJNA376117 30673 262 1.62963 4.2696306 Parachlamydiaceae 92713 Bacteria Bacteria 134 2.0499999999999998e-34   NR WP_059060408.1 389348 g30371 i0 80.2 1.96946564885496 86 17 98.5 0 3 260 567 652 WP_059060408.1 methyl-accepting chemotaxis protein [Candidatus Protochlamydia naegleriophila] diamond 516 134 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia naegleriophila
31609023 31609023 PRJNA376117_P_NODE_34816_length_250_cov_0.870056_g34514_i0 PRJNA376117 34816 250 0.870056 2.17514 Candidatus Protochlamydia 282132 Bacteria Bacteria 89.7 1.2e-18   NR WP_226996109.1 1785087 g34514 i0 68.1 6.144 72 22 85.2 1 250 38 350 421 WP_226996109.1 ribonuclease R [Candidatus Protochlamydia sp. W-9] diamond 1536 89.7 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Candidatus Protochlamydia Candidatus Protochlamydia sp. W-9

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;