RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA376117" and tax_kingdom = "Orthornavirae"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Orthornavirae · 3 ✖

bioproject 1

  • PRJNA376117 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28496180 28496180 PRJNA376117_P_NODE_16067_length_343_cov_1.233333_g15765_i0 PRJNA376117 16067 343 1.233333 4.23033219 Burdock mosaic virus 3036445 Viruses Viruses 229 6.729999999999999e-67   NR WEU75084.1 3036445 g15765 i0 98.2 0.997084548104956 114 2 99.7 0 2 343 1504 1617 WEU75084.1 polyprotein [Burdock mosaic virus] diamond 342 229 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Torradovirus Torradovirus arctii
30391321 30391321 PRJNA376117_P_NODE_9633_length_433_cov_1.800000_g9331_i0 PRJNA376117 9633 433 1.8 7.794 rice curl dwarf-associated dicistro-like virus 1 3377419 Viruses Viruses 56.2 5.71e-6   NR XFO60888.1 3377419 g9331 i0 42.4 0.685912240184757 59 34 40.9 0 429 253 789 847 XFO60888.1 structural polyprotein [rice curl dwarf-associated dicistro-like virus 1] diamond 297 56.2 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   rice curl dwarf-associated dicistro-like virus 1
31908181 31908181 PRJNA376117_P_NODE_26757_length_277_cov_1.132353_g26455_i0 PRJNA376117 26757 277 1.132353 3.13661781 Burdock mosaic virus 3036445 Viruses Viruses 174 2.6499999999999997e-48   NR WEU75084.1 3036445 g26455 i0 94.6 0.996389891696751 92 5 99.6 0 2 277 1882 1973 WEU75084.1 polyprotein [Burdock mosaic virus] diamond 276 174 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Secoviridae Torradovirus Torradovirus arctii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;