RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA376117" and tax_kingdom = "Methanobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 3 ✖

bioproject 1

  • PRJNA376117 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27927738 27927738 PRJNA376117_P_NODE_37025_length_248_cov_0.880000_g36723_i0 PRJNA376117 37025 248 0.88 2.1824 Methanosphaera sp. 2666342 Archaea Archaea 101 6.29e-23   NR MEE3419334.1 2666342 g36723 i0 74.7 0.955645161290323 79 18 95.6 1 244 8 154 230 MEE3419334.1 hypothetical protein [Methanosphaera sp.] diamond 237 101 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp.
28386798 28386798 PRJNA376117_P_NODE_33286_length_252_cov_1.720670_g32984_i0 PRJNA376117 33286 252 1.72067 4.3360884 root 1 Root_unresolved Root_unresolved 49.7 9.78e-5   NR WP_080510819.1 416585 g32984 i0 47.7 3.3452380952381 44 23 52.4 0 188 57 129 172 WP_080510819.1 protein kinase domain-containing protein [Halorubrum californiense] diamond 843 49.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum californiense
29253583 29253583 PRJNA376117_P_NODE_27189_length_275_cov_1.524752_g26887_i0 PRJNA376117 27189 275 1.524752 4.193068 Methanosphaera sp. rholeuAM27 2666342 Archaea Archaea 47.4 0.00127   NR RAP51212.1 1945577 g26887 i0 52.3 1.24363636363636 44 20 46.9 1 3 131 60 103 RAP51212.1 MAG: hypothetical protein BZ138_05740 [Methanosphaera sp. rholeuAM270] diamond 342 47.4 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanosphaera Methanosphaera sp. rholeuAM270

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;