RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA371613" and tax_phylum = "Streptophyta"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA371613 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27391131 27391131 PRJNA371613_P_NODE_6623_length_178_cov_1.326241_g6447_i0 PRJNA371613 6623 178 1.326241 2.36070898 Castanea dentata 134033 Plants Plants 70.9 1.5e-13   NR KAL4598515.1 134033 g6447 i0 60.3 0.97752808988764 58 23 97.8 0 3 176 78 135 KAL4598515.1 hypothetical protein ACB092_11G064500 [Castanea dentata] diamond 174 70.9 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fagales Fagaceae Castanea Castanea dentata
27832915 27832915 PRJNA371613_P_NODE_7764_length_169_cov_0.969697_g7588_i0 PRJNA371613 7764 169 0.969697 1.63878793 Vigna unguiculata 3917 Plants Plants 45.4 0.00157   NR XP_027905822.1 3917 g7588 i0 48.8 3.42603550295858 41 19 69.2 1 163 47 255 295 XP_027905822.1 uncharacterized protein LOC114165378 [Vigna unguiculata] diamond 579 45.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Fabales Fabaceae Vigna Vigna unguiculata
31971415 31971415 PRJNA371613_P_NODE_7218_length_172_cov_0.948148_g7042_i0 PRJNA371613 7218 172 0.948148 1.63081456 Klebsormidium nitens 105231 Plants Plants 60.5 7.64e-9   NR GAQ85876.1 105231 g7042 i0 56.6 9.66279069767442 53 23 92.4 0 170 12 372 424 GAQ85876.1 Vacuolar H+-ATPase V1 sector subunit H [Klebsormidium nitens] diamond 1662 60.5 1 Eukaryota   Viridiplantae Streptophyta Klebsormidiophyceae Klebsormidiales Klebsormidiaceae Klebsormidium Klebsormidium nitens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;