RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA371613" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA371613 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27707115 27707115 PRJNA371613_P_NODE_9124_length_162_cov_1.464000_g8948_i0 PRJNA371613 9124 162 1.464 2.37168 Orcinus orca 9733 Chordata Chordata 42.7 0.0124   NR XP_004267183.2 9733 g8948 i0 59 0.722222222222222 39 11 63 1 23 124 34 72 XP_004267183.2 forkhead box protein N1 isoform X2 [Orcinus orca] diamond 117 42.7 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Delphinidae Orcinus Orcinus orca
30264768 30264768 PRJNA371613_P_NODE_5292_length_206_cov_1.461538_g5116_i0 PRJNA371613 5292 206 1.461538 3.01076828 Hypanus sabinus 79690 Chordata Chordata 61.2 6.84e-9   NR XP_059823631.1 79690 g5116 i0 46 0.728155339805825 50 27 72.8 0 169 20 558 607 XP_059823631.1 IQ calmodulin-binding motif-containing protein 1 isoform X1 [Hypanus sabinus] diamond 150 61.2 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
32034778 32034778 PRJNA371613_P_NODE_8798_length_164_cov_1.007874_g8622_i0 PRJNA371613 8798 164 1.007874 1.65291336 Rousettus aegyptiacus 9407 Chordata Chordata 43.5 0.00268   NR KAF6427968.1 9407 g8622 i0 56.4 2.85365853658537 39 12 69.5 2 47 160 75 109 KAF6427968.1 hypothetical protein HJG63_008428 [Rousettus aegyptiacus] diamond 468 43.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;