RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA358490" and tax_phylum = "Oomycota"

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tax_superkingdom 1

tax_phylum 1

  • Oomycota · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA358490 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28197268 28197268 PRJNA358490_P_NODE_6846_length_493_cov_11.160793_g6515_i0 PRJNA358490 6846 493 11.160793 55.02270949 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 55.5 1.88e-5   NR TMW59321.1 41045 g6515 i0 32.2 4.87423935091278 115 74 70 2 109 453 624 734 TMW59321.1 hypothetical protein Poli38472_004390 [Pythium oligandrum] diamond 2403 55.5 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium oligandrum
29807575 29807575 PRJNA358490_P_NODE_4971_length_620_cov_3.745267_g4696_i0 PRJNA358490 4971 620 3.745267 23.2206554 Phytophthora 4783 SAR_Eukaryotes SAR_Eukaryotes 190 1.27e-53   NR KAF1787781.1 29920 g4696 i0 56.4 14.7241935483871 179 72 85.6 2 6 536 379 553 KAF1787781.1 Transglutaminase elicitor [Phytophthora cactorum] diamond 9129 191 0.994764397905759 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora cactorum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;