RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA358490" and tax_phylum = "Heterolobosea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA358490 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26758233 26758233 PRJNA358490_P_NODE_17681_length_155_cov_1.629310_g17337_i0 PRJNA358490 17681 155 1.62931 2.5254305 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 78.6 3.33e-16   NR XP_002674366.1 5762 g17337 i0 77.6 0.948387096774194 49 11 94.8 0 2 148 105 153 XP_002674366.1 uncharacterized protein NAEGRDRAFT_80630 [Naegleria gruberi] diamond 147 78.6 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27801539 27801539 PRJNA358490_P_NODE_16324_length_167_cov_1.140625_g15980_i0 PRJNA358490 16324 167 1.140625 1.90484375 Naegleria gruberi 5762 Heterolobosea other_Eukaryota 73.9 1.98e-14   NR XP_002676609.1 5762 g15980 i0 90 0.718562874251497 40 4 71.9 0 121 2 1 40 XP_002676609.1 uncharacterized protein NAEGRDRAFT_83175 [Naegleria gruberi] diamond 120 73.9 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
30043203 30043203 PRJNA358490_P_NODE_8711_length_401_cov_8.309392_g8370_i0 PRJNA358490 8711 401 8.309392 33.32066192 Acrasis kona 1008807 Heterolobosea other_Eukaryota 50.4 4.15e-4   NR KAL0487691.1 1008807 g8370 i0 61.5 0.291770573566085 39 15 29.2 0 380 264 681 719 KAL0487691.1 long-chain acyl-CoA synthetase [Acrasis kona] diamond 117 50.4 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;