RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA358490" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 3 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA358490 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20800550 20800550 PRJNA358490_P_NODE_3837_length_727_cov_15.797965_g3612_i0 PRJNA358490 3837 727 15.797965 114.85120555 Metazoa 33208 Chordata Chordata 292 1.6299999999999996e-96   NR XP_035686142.1 7739 g3612 i0 68 7.32462173314993 203 62 83.4 2 682 77 47 247 XP_035686142.1 peroxiredoxin-2-like [Branchiostoma floridae] diamond 5325 292 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
27502934 27502934 PRJNA358490_P_NODE_11623_length_263_cov_2.196429_g11279_i0 PRJNA358490 11623 263 2.196429 5.77660827 Metazoa 33208 Chordata Chordata 45.4 0.00535   NR XP_051782102.1 27687 g11279 i0 55 2.45247148288973 40 18 45.6 0 183 64 219 258 XP_051782102.1 uncharacterized protein K02A2.6-like [Erpetoichthys calabaricus] diamond 645 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus
28622458 28622458 PRJNA358490_P_NODE_16707_length_163_cov_1.862903_g16363_i0 PRJNA358490 16707 163 1.862903 3.03653189 Muntiacus reevesi 9886 Chordata Chordata 53.1 2.13e-6   NR KAB0354379.1 9886 g16363 i0 56.1 6.47852760736196 41 18 75.5 0 125 3 92 132 KAB0354379.1 hypothetical protein FD755_022917 [Muntiacus reevesi] diamond 1056 53.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Cervidae Muntiacus Muntiacus reevesi

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;