RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA358490" and tax_kingdom = "Orthornavirae"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Orthornavirae · 4 ✖

bioproject 1

  • PRJNA358490 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
399053 399053 PRJNA358490_P_NODE_1_length_6607_cov_23.984318_g0_i0 PRJNA358490 1 6607 23.984318 1584.64389026 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 3030 0   NR XCO49569.1 3003959 g0 i0 67.3 1.9692750113516 2206 642 97.4 8 3 6440 178 2364 XCO49569.1 MAG: putative ORF1 protein, partial [Picornavirales sp.] diamond 13011 3030 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3
18250558 18250558 PRJNA358490_P_NODE_10715_length_298_cov_1.583012_g10373_i0 PRJNA358490 10715 298 1.583012 4.71737576 Viruses 10239 Viruses Viruses 171 5.829999999999999e-47   NR QZZ63321.1 2874395 g10373 i0 77.8 1.99328859060403 99 22 99.7 0 1 297 408 506 QZZ63321.1 hypothetical protein [Nelson Picorna-like virus 4] diamond 594 171 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Nelson Picorna-like virus 4
27738591 27738591 PRJNA358490_P_NODE_9564_length_355_cov_3.132911_g9222_i0 PRJNA358490 9564 355 3.132911 11.12183405 Lycopersicon esculentum picorna-like virus 2739854 Viruses Viruses 54.7 9.01e-6   NR QKK82959.1 2739854 g9222 i0 34.7 0.802816901408451 95 53 72.7 2 272 15 10 104 QKK82959.1 hypothetical protein, partial [Lycopersicon esculentum picorna-like virus] diamond 285 54.7 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Lycopersicon esculentum picorna-like virus
28906282 28906282 PRJNA358490_P_NODE_16208_length_168_cov_1.263566_g15864_i0 PRJNA358490 16208 168 1.263566 2.12279088 Plantago mottle virus 312274 Viruses Viruses 90.5 1.98e-19   NR YP_002308445.1 312274 g15864 i0 74.5 0.982142857142857 55 14 98.2 0 167 3 420 474 YP_002308445.1 polyprotein [Plantago mottle virus] diamond 165 90.5 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Tymoviridae Tymovirus Tymovirus plantagonis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;