RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA358209" and tax_superkingdom = "Eukaryota"

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tax_phylum 3

tax_kingdom 3

tax_clade 2

tax_superkingdom 1

  • Eukaryota · 4 ✖

bioproject 1

  • PRJNA358209 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27517239 27517239 PRJNA358209_P_NODE_1183_length_161_cov_0.910714_g1181_i0 PRJNA358209 1183 161 0.910714 1.46624954 Neohortaea acidophila 245834 Fungi Fungi 84 2.65e-17   NR XP_033585491.1 245834 g1181 i0 66 0.987577639751553 53 18 98.8 0 1 159 196 248 XP_033585491.1 uncharacterized protein BDY17DRAFT_306039 [Neohortaea acidophila] diamond 159 84 1 Eukaryota Opisthokonta Fungi Ascomycota Dothideomycetes Mycosphaerellales Teratosphaeriaceae Neohortaea Neohortaea acidophila
27832898 27832898 PRJNA358209_P_NODE_744_length_165_cov_0.879310_g742_i0 PRJNA358209 744 165 0.87931 1.4508615 Aspergillus chevalieri 182096 Fungi Fungi 67 3.59e-11   NR XP_043137922.1 182096 g742 i0 93.9 1.2 33 2 60 0 67 165 327 359 XP_043137922.1 cholesterol esterase [Aspergillus chevalieri] diamond 198 67 1 Eukaryota Opisthokonta Fungi Ascomycota Eurotiomycetes Eurotiales Aspergillaceae Aspergillus Aspergillus chevalieri
28622454 28622454 PRJNA358209_P_NODE_847_length_164_cov_0.886957_g845_i0 PRJNA358209 847 164 0.886957 1.45460948 Solanum commersonii 4109 Plants Plants 108 6.01e-26   NR KAG5570659.1 4109 g845 i0 85.2 2.94512195121951 54 8 98.8 0 163 2 202 255 KAG5570659.1 hypothetical protein H5410_060425 [Solanum commersonii] diamond 483 108 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Solanales Solanaceae Solanum Solanum commersonii
30232821 30232821 PRJNA358209_P_NODE_432_length_169_cov_0.925000_g430_i0 PRJNA358209 432 169 0.925 1.56325 Ranitomeya imitator 111125 Chordata Chordata 47 4.04e-4   NR CAJ0956274.1 111125 g430 i0 60.6 0.585798816568047 33 13 58.6 0 69 167 1 33 CAJ0956274.1 unnamed protein product [Ranitomeya imitator] diamond 99 47 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;