RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA358209" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA358209 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28464585 28464585 PRJNA358209_P_NODE_546_length_166_cov_0.871795_g544_i0 PRJNA358209 546 166 0.871795 1.4471797 Actinomycetota bacterium 2900548 Bacteria Bacteria 94.4 8.770000000000001e-21   NR MDP9376881.1 2900548 g544 i0 83.3 4.95180722891566 54 9 97.6 0 165 4 571 624 MDP9376881.1 transketolase [Actinomycetota bacterium] diamond 822 94.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29159268 29159268 PRJNA358209_P_NODE_1029_length_162_cov_0.902655_g1027_i0 PRJNA358209 1029 162 0.902655 1.4623011 Nostocoides vanveenii 330835 Bacteria Bacteria 64.7 1.74e-10   NR WP_344060306.1 330835 g1027 i0 80.5 0.759259259259259 41 8 75.9 0 124 2 274 314 WP_344060306.1 hypothetical protein [Nostocoides vanveenii] diamond 123 64.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Intrasporangiaceae Nostocoides Nostocoides vanveenii
30264744 30264744 PRJNA358209_P_NODE_672_length_165_cov_0.879310_g670_i0 PRJNA358209 672 165 0.87931 1.4508615 Dermatophilaceae bacterium 2728912 Bacteria Bacteria 43.1 0.00938   NR HOF64828.1 2728912 g670 i0 46.5 0.781818181818182 43 20 78.2 1 16 144 134 173 HOF64828.1 alpha/beta hydrolase-fold protein [Dermatophilaceae bacterium] diamond 129 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae   Dermatophilaceae bacterium
31022777 31022777 PRJNA358209_P_NODE_955_length_163_cov_0.894737_g953_i0 PRJNA358209 955 163 0.894737 1.45842131 Actinomyces bouchesdurhonensis 1852361 Bacteria Bacteria 113 2.1e-29   NR WP_073982439.1 1852361 g953 i0 98.1 0.993865030674847 54 1 99.4 0 1 162 19 72 WP_073982439.1 WecB/TagA/CpsF family glycosyltransferase [Actinomyces bouchesdurhonensis] diamond 162 113 1 Bacteria   Bacillati Actinomycetota Actinomycetes Actinomycetales Actinomycetaceae Actinomyces Actinomyces bouchesdurhonensis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;