RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA358049" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA358049 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26599740 26599740 PRJNA358049_S_NODE_8981_length_212_cov_1.564417_g8933_i0 PRJNA358049 8981 212 1.564417 3.31656404 Candidatus Nanosynbacter sp. 2725945 Bacteria Bacteria 127 4.46e-35   NR MBF1037529.1 2725945 g8933 i0 97.1 0.976415094339623 69 2 97.6 0 4 210 43 111 MBF1037529.1 hypothetical protein [Candidatus Nanosynbacter sp.] diamond 207 127 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp.
26694894 26694894 PRJNA358049_S_NODE_11301_length_194_cov_1.379310_g11253_i0 PRJNA358049 11301 194 1.37931 2.6758614 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 72.8 3.71e-14   NR MEJ0072657.1 2026720 g11253 i0 59.3 3.64948453608247 59 24 91.2 0 16 192 4 62 MEJ0072657.1 HNH endonuclease [Candidatus Saccharibacteria bacterium] diamond 708 72.8 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
28085464 28085464 PRJNA358049_S_NODE_11545_length_193_cov_1.055556_g11497_i0 PRJNA358049 11545 193 1.055556 2.03722308 Candidatus Nanogingivalis gingivitcus 2171992 Bacteria Bacteria 123 8.669999999999998e-31   NR WP_129718745.1 2171992 g11497 i0 100 0.994818652849741 64 0 99.5 0 192 1 36 99 WP_129718745.1 hypothetical protein [Candidatus Nanogingivalis gingivitcus] diamond 192 123 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae Candidatus Nanogingivalis Candidatus Nanogingivalis gingivitcus
30675045 30675045 PRJNA358049_S_NODE_9293_length_209_cov_1.512500_g9245_i0 PRJNA358049 9293 209 1.5125 3.161125 Candidatus Nanogingivalaceae bacterium 2725942 Bacteria Bacteria 125 1.45e-32   NR MBF1015493.1 2725942 g9245 i0 95.7 1.98086124401914 69 3 99 0 3 209 250 318 MBF1015493.1 DNA recombination protein RmuC [Candidatus Nanogingivalaceae bacterium] diamond 414 125 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae   Candidatus Nanogingivalaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;