RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA358049" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA358049 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26663047 26663047 PRJNA358049_S_NODE_10801_length_198_cov_0.993289_g10753_i0 PRJNA358049 10801 198 0.993289 1.96671222 Actinomycetes bacterium 1883427 Bacteria Bacteria 69.3 8.47e-12   NR MEI8232098.1 1883427 g10753 i0 51.5 1 66 31 98.5 1 196 2 438 503 MEI8232098.1 hypothetical protein [Actinomycetes bacterium] diamond 198 69.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
31465576 31465576 PRJNA358049_S_NODE_15896_length_169_cov_1.075000_g15848_i0 PRJNA358049 15896 169 1.075 1.81675 unclassified Agromyces 2639701 Bacteria Bacteria 93.2 3.53e-21   NR WP_375832714.1 2639701 g15848 i0 87 2.89349112426035 54 7 95.9 0 167 6 208 261 WP_375832714.1 MULTISPECIES: sugar phosphate isomerase/epimerase family protein [unclassified Agromyces] diamond 489 93.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Agromyces  

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;