RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA358049" and tax_clade = "Sar"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

bioproject 1

  • PRJNA358049 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4225590 4225590 PRJNA358049_S_NODE_10444_length_200_cov_1.695364_g10396_i0 PRJNA358049 10444 200 1.695364 3.390728 Paulinella micropora 1928728 SAR_Eukaryotes SAR_Eukaryotes 125 7.57e-32   NR YP_009709953.1 1928728 g10396 i0 89.4 0.99 66 7 99 0 200 3 307 372 YP_009709953.1 ATP synthase subunit alpha [Paulinella micropora] diamond 198 125 1 Eukaryota Sar   Cercozoa Imbricatea Euglyphida Paulinellidae Paulinella Paulinella micropora
32824514 32824514 PRJNA358049_S_NODE_12980_length_184_cov_1.762963_g12932_i0 PRJNA358049 12980 184 1.762963 3.24385192 Seminavis robusta 568900 SAR_Eukaryotes SAR_Eukaryotes 84.3 5.25e-19   NR CAB9499426.1 568900 g12932 i0 97.6 1.33695652173913 41 1 66.8 0 168 46 97 137 CAB9499426.1 40S ribosomal protein S15a [Seminavis robusta] diamond 246 84.3 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Seminavis Seminavis robusta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;