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contig_metadata

10 rows where analysis = "diamond", bioproject = "PRJNA358049" and tax_clade = "Bacteria candidate phyla"

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tax_superkingdom 1

tax_clade 1

  • Bacteria candidate phyla · 10 ✖

bioproject 1

  • PRJNA358049 · 10 ✖

analysis 1

  • diamond · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26599740 26599740 PRJNA358049_S_NODE_8981_length_212_cov_1.564417_g8933_i0 PRJNA358049 8981 212 1.564417 3.31656404 Candidatus Nanosynbacter sp. 2725945 Bacteria Bacteria 127 4.46e-35   NR MBF1037529.1 2725945 g8933 i0 97.1 0.976415094339623 69 2 97.6 0 4 210 43 111 MBF1037529.1 hypothetical protein [Candidatus Nanosynbacter sp.] diamond 207 127 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Nanosynbacterales Candidatus Nanosynbacteraceae Candidatus Nanosynbacter Candidatus Nanosynbacter sp.
26694894 26694894 PRJNA358049_S_NODE_11301_length_194_cov_1.379310_g11253_i0 PRJNA358049 11301 194 1.37931 2.6758614 Candidatus Saccharimonadota bacterium 2026720 Bacteria Bacteria 72.8 3.71e-14   NR MEJ0072657.1 2026720 g11253 i0 59.3 3.64948453608247 59 24 91.2 0 16 192 4 62 MEJ0072657.1 HNH endonuclease [Candidatus Saccharibacteria bacterium] diamond 708 72.8 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharimonadota bacterium
27612049 27612049 PRJNA358049_S_NODE_18424_length_162_cov_1.380531_g18376_i0 PRJNA358049 18424 162 1.380531 2.23646022 Minisyncoccota bacterium 2053589 Bacteria Bacteria 62.4 1.42e-9   NR MDD4989195.1 2053589 g18376 i0 55.1 0.907407407407407 49 22 90.7 0 161 15 142 190 MDD4989195.1 tetratricopeptide repeat protein [Candidatus Paceibacterota bacterium] diamond 147 62.4 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
28085464 28085464 PRJNA358049_S_NODE_11545_length_193_cov_1.055556_g11497_i0 PRJNA358049 11545 193 1.055556 2.03722308 Candidatus Nanogingivalis gingivitcus 2171992 Bacteria Bacteria 123 8.669999999999998e-31   NR WP_129718745.1 2171992 g11497 i0 100 0.994818652849741 64 0 99.5 0 192 1 36 99 WP_129718745.1 hypothetical protein [Candidatus Nanogingivalis gingivitcus] diamond 192 123 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae Candidatus Nanogingivalis Candidatus Nanogingivalis gingivitcus
28481583 28481583 PRJNA358049_S_NODE_12806_length_185_cov_1.889706_g12758_i0 PRJNA358049 12806 185 1.889706 3.4959561 Bacteria 2 Bacteria Bacteria 100 7.619999999999999e-23   NR OQB19547.1 1852938 g12758 i0 78.7 11.8702702702703 61 13 98.9 0 184 2 450 510 OQB19547.1 MAG: Alanine--tRNA ligase [Parcubacteria group bacterium ADurb.Bin192] diamond 2196 101 0.99009900990099 Bacteria Bacteria candidate phyla             Parcubacteria group bacterium ADurb.Bin192
30643410 30643410 PRJNA358049_S_NODE_14413_length_176_cov_2.456693_g14365_i0 PRJNA358049 14413 176 2.456693 4.32377968 Patescibacteria group bacterium 2052139 Bacteria Bacteria 58.5 4.03e-8   NR HLC69832.1 2052139 g14365 i0 43.1 2.96590909090909 58 33 98.9 0 1 174 348 405 HLC69832.1 excinuclease ABC subunit UvrB [Patescibacteria group bacterium] diamond 522 58.5 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium
30675045 30675045 PRJNA358049_S_NODE_9293_length_209_cov_1.512500_g9245_i0 PRJNA358049 9293 209 1.5125 3.161125 Candidatus Nanogingivalaceae bacterium 2725942 Bacteria Bacteria 125 1.45e-32   NR MBF1015493.1 2725942 g9245 i0 95.7 1.98086124401914 69 3 99 0 3 209 250 318 MBF1015493.1 DNA recombination protein RmuC [Candidatus Nanogingivalaceae bacterium] diamond 414 125 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Nanosyncoccalia Candidatus Nanogingivales Candidatus Nanogingivalaceae   Candidatus Nanogingivalaceae bacterium
31767058 31767058 PRJNA358049_S_NODE_16497_length_167_cov_1.220339_g16449_i0 PRJNA358049 16497 167 1.220339 2.03796613 Pseudomonadati 3379134 Bacteria Bacteria 107 1e-25   NR PIQ71616.1 1974857 g16449 i0 90.9 4.94011976047904 55 5 98.8 0 1 165 78 132 PIQ71616.1 MAG: hypothetical protein COV87_02360 [Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_37_16] diamond 825 107 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium CG11_big_fil_rev_8_21_14_0_20_37_16
31876392 31876392 PRJNA358049_S_NODE_6077_length_250_cov_1.268657_g6029_i0 PRJNA358049 6077 250 1.268657 3.1716425 Candidatus Roizmanbacteria bacterium 2282149 Bacteria Bacteria 112 2.25e-27   NR MCX6732311.1 2282149 g6029 i0 86.2 1.392 58 8 69.6 0 77 250 1 58 MCX6732311.1 CBS domain-containing protein [Candidatus Roizmanbacteria bacterium] diamond 348 112 1 Bacteria Bacteria candidate phyla   Candidatus Roizmaniibacteriota         Candidatus Roizmanbacteria bacterium
32066275 32066275 PRJNA358049_S_NODE_13418_length_182_cov_1.338346_g13370_i0 PRJNA358049 13418 182 1.338346 2.43578972 Patescibacteria group bacterium 2052139 Bacteria Bacteria 107 2.2e-27   NR MDE2311464.1 2052139 g13370 i0 83.3 0.989010989010989 60 10 98.9 0 1 180 41 100 MDE2311464.1 signal peptidase I [Patescibacteria group bacterium] diamond 180 107 1 Bacteria Bacteria candidate phyla             Patescibacteria group bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;