RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA358009" and tax_phylum = "Candidatus Saccharimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Saccharimonadota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA358009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26663046 26663046 PRJNA358009_P_NODE_9521_length_185_cov_5.823529_g9452_i0 PRJNA358009 9521 185 5.823529 10.77352865 Candidatus Saccharimonadales bacterium 2973664 Bacteria Bacteria 100 4.48e-24   NR MEO5690616.1 2973664 g9452 i0 88.1 0.956756756756757 59 7 95.7 0 185 9 165 223 MEO5690616.1 undecaprenyl-diphosphate phosphatase [Candidatus Saccharimonadales bacterium] diamond 177 100 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales     Candidatus Saccharimonadales bacterium
27612043 27612043 PRJNA358009_P_NODE_10924_length_177_cov_2.203125_g10855_i0 PRJNA358009 10924 177 2.203125 3.89953125 Candidatus Saccharibacteria bacterium 49-2 1895829 Bacteria Bacteria 107 3.56e-27   NR OJU87671.1 1895829 g10855 i0 100 3.79661016949153 56 0 94.9 0 8 175 57 112 OJU87671.1 MAG: 30S ribosomal protein S3 [Candidatus Saccharibacteria bacterium 49-20] diamond 672 107 1 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota         Candidatus Saccharibacteria bacterium 49-20
28513124 28513124 PRJNA358009_P_NODE_16107_length_161_cov_2.928571_g16038_i0 PRJNA358009 16107 161 2.928571 4.71499931 Candidatus Nanosynsacchari 2789662 Bacteria Bacteria 48.9 2.41e-5   NR WP_129693305.1 1986206 g16038 i0 71 1.77018633540373 31 9 57.8 0 66 158 1 31 WP_129693305.1 Holliday junction resolvase RuvX [Candidatus Nanosynsacchari sp. TM7_ANC_38.39_G1_1] diamond 285 49.3 0.991886409736308 Bacteria Bacteria candidate phyla   Candidatus Saccharimonadota Candidatus Saccharimonadia Candidatus Saccharimonadales Candidatus Saccharimonadaceae Candidatus Nanosynsacchari Candidatus Nanosynsacchari sp. TM7_ANC_38.39_G1_1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;