RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA358009" and tax_phylum = "Bdellovibrionota"

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tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA358009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
398353 398353 PRJNA358009_P_NODE_4441_length_327_cov_2.133094_g4378_i0 PRJNA358009 4441 327 2.133094 6.97521738 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 55.1 4.13e-6   NR HEY8278984.1 3034175 g4378 i0 71.9 0.293577981651376 32 9 29.4 0 96 1 75 106 HEY8278984.1 hypothetical protein [Bdellovibrionota bacterium] diamond 96 55.1 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28527817 28527817 PRJNA358009_P_NODE_6327_length_327_cov_1.467626_g6264_i0 PRJNA358009 6327 327 1.467626 4.79913702 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 69.3 2.44e-12   NR MEK6553941.1 3034175 g6264 i0 39.4 0.954128440366973 104 29 95.4 1 3 314 8 77 MEK6553941.1 cytochrome B subunit [Bdellovibrionota bacterium] diamond 312 69.3 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31134304 31134304 PRJNA358009_P_NODE_6735_length_326_cov_1.700361_g6672_i0 PRJNA358009 6735 326 1.700361 5.54317686 Pseudomonadati 3379134 Bacteria Bacteria 108 3.59e-25   NR QQG37209.1 349221 g6672 i0 54.6 3.97546012269939 108 15 99.4 1 3 326 226 299 QQG37209.1 MAG: GTP cyclohydrolase II [Micavibrio aeruginosavorus] diamond 1296 108 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Micavibrio Micavibrio aeruginosavorus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;