RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_phylum = "Nematoda"

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tax_superkingdom 1

tax_phylum 1

  • Nematoda · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA356682 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4224716 4224716 PRJNA356682_P_NODE_26504_length_286_cov_1.446009_g25813_i0 PRJNA356682 26504 286 1.446009 4.13558574 Cylicocyclus nassatus 53992 Nematoda Nematoda 109 2.26e-25   NR CAJ0600087.1 53992 g25813 i0 71.2 0.765734265734266 73 18 73.4 1 73 282 144 216 CAJ0600087.1 unnamed protein product [Cylicocyclus nassatus] diamond 219 109 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Strongylidae Cylicocyclus Cylicocyclus nassatus
26885171 26885171 PRJNA356682_P_NODE_40801_length_245_cov_1.569767_g40110_i0 PRJNA356682 40801 245 1.569767 3.84592915 Caenorhabditis bovis 2654633 Nematoda Nematoda 110 7.54e-26   NR CAB3409357.1 2654633 g40110 i0 87.7 1.45714285714286 57 7 69.8 0 73 243 338 394 CAB3409357.1 unnamed protein product [Caenorhabditis bovis] diamond 357 110 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis bovis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;