RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA356682 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6774993 6774993 PRJNA356682_P_NODE_21246_length_314_cov_2.294606_g20555_i0 PRJNA356682 21246 314 2.294606 7.20506284 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 135 1.71e-38   NR XP_004333102.1 1257118 g20555 i0 66.7 6.42993630573248 96 32 91.7 0 27 314 8 103 XP_004333102.1 ribosomal protein L32, putative [Acanthamoeba castellanii str. Neff] diamond 2019 135 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13151626 13151626 PRJNA356682_P_NODE_43991_length_242_cov_0.911243_g43300_i0 PRJNA356682 43991 242 0.911243 2.20520806 Paramoeba perurans 437603 Discosea other_Eukaryota 148 1.3899999999999999e-40   NR WQA41796.1 437603 g43300 i0 90.9 0.954545454545455 77 7 95.5 0 236 6 1 77 WQA41796.1 tubulin beta-2C chain [Paramoeba perurans] diamond 231 148 1 Eukaryota Amoebozoa   Discosea Flabellinia Dactylopodida Paramoebidae Paramoeba Paramoeba perurans
31307120 31307120 PRJNA356682_P_NODE_40295_length_246_cov_0.890173_g39604_i0 PRJNA356682 40295 246 0.890173 2.18982558 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 63.2 2.27e-9   NR XP_004338843.1 1257118 g39604 i0 42.5 0.975609756097561 80 38 96.3 2 242 6 177 249 XP_004338843.1 peptidylprolyl cis-trans isomerase, FKBP-type domain containing protein [Acanthamoeba castellanii str. Neff] diamond 240 63.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;