RNAquarium Metadata Server
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contig_metadata

6 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA356682 · 6 ✖

analysis 1

  • diamond · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27738561 27738561 PRJNA356682_P_NODE_16984_length_346_cov_2.655678_g16293_i0 PRJNA356682 16984 346 2.655678 9.18864588 Leucoraja erinaceus 7782 Chordata Chordata 57.8 4.86e-7   NR XP_055493235.1 7782 g16293 i0 57.1 1.82080924855491 42 18 36.4 0 220 345 114 155 XP_055493235.1 uncharacterized protein LOC129698247 [Leucoraja erinaceus] diamond 630 57.8 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rajiformes Rajidae Leucoraja Leucoraja erinaceus
29032986 29032986 PRJNA356682_P_NODE_21568_length_312_cov_1.648536_g20877_i0 PRJNA356682 21568 312 1.648536 5.14343232 Staurois parvus 386267 Chordata Chordata 53.5 1.77e-6   NR CAI9557087.1 386267 g20877 i0 63.9 0.692307692307692 36 11 32.7 1 105 4 24 59 CAI9557087.1 unnamed protein product, partial [Staurois parvus] diamond 216 53.5 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Ranidae Staurois Staurois parvus
29127723 29127723 PRJNA356682_P_NODE_5329_length_613_cov_2.101852_g4651_i0 PRJNA356682 5329 613 2.101852 12.88435276 Ranitomeya imitator 111125 Chordata Chordata 69.7 4.51e-10   NR CAJ0964204.1 111125 g4651 i0 73 0.548123980424144 37 10 18.1 0 437 327 15 51 CAJ0964204.1 unnamed protein product [Ranitomeya imitator] diamond 336 69.7 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Dendrobatidae Ranitomeya Ranitomeya imitator
30864630 30864630 PRJNA356682_P_NODE_14174_length_376_cov_1.158416_g13484_i0 PRJNA356682 14174 376 1.158416 4.35564416 Rissa tridactyla 75485 Chordata Chordata 45.8 0.0139   NR XP_054063181.1 75485 g13484 i0 38.3 0.75 94 55 74.2 2 18 296 1588 1679 XP_054063181.1 mucin-4-like isoform X2 [Rissa tridactyla] diamond 282 45.8 1 Eukaryota Opisthokonta Metazoa Chordata Aves Charadriiformes Laridae Rissa Rissa tridactyla
31402247 31402247 PRJNA356682_P_NODE_38516_length_248_cov_0.880000_g37825_i0 PRJNA356682 38516 248 0.88 2.1824 Hypanus sabinus 79690 Chordata Chordata 46.6 0.00174   NR XP_059823631.1 79690 g37825 i0 40.5 0.508064516129032 42 25 50.8 0 120 245 558 599 XP_059823631.1 IQ calmodulin-binding motif-containing protein 1 isoform X1 [Hypanus sabinus] diamond 126 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
31686614 31686614 PRJNA356682_P_NODE_24297_length_296_cov_9.331839_g23606_i0 PRJNA356682 24297 296 9.331839 27.62224344 Xenopus laevis 8355 Chordata Chordata 46.6 4.3e-4   NR OCT67434.1 8355 g23606 i0 39 0.597972972972973 59 36 59.8 0 260 84 24 82 OCT67434.1 hypothetical protein XELAEV_18038730mg [Xenopus laevis] diamond 177 46.6 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Xenopus Xenopus laevis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;