RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA356682 · 4 ✖

analysis 1

  • diamond · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13151568 13151568 PRJNA356682_P_NODE_41811_length_244_cov_0.900585_g41120_i0 PRJNA356682 41811 244 0.900585 2.1974274 Mycena 41247 Fungi Fungi 81.6 7.69e-16   NR KAJ7064351.1 380012 g41120 i0 52.2 1.70901639344262 69 33 84.8 0 31 237 539 607 KAJ7064351.1 eukaryotic translation elongation factor 2 [Mycena amicta] diamond 417 81.6 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Agaricales Mycenaceae Mycena Mycena amicta
27123280 27123280 PRJNA356682_P_NODE_44602_length_241_cov_0.916667_g43911_i0 PRJNA356682 44602 241 0.916667 2.20916747 Agaricomycetes 155619 Fungi Fungi 65.5 3.38e-10   NR KLO13680.1 27342 g43911 i0 85.3 1.26970954356846 34 5 42.3 0 143 42 1 34 KLO13680.1 glyoxylate dehydrogenase [Schizopora paradoxa] diamond 306 65.9 0.993930197268589 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Hymenochaetales Schizoporaceae Schizopora Schizopora paradoxa
28702693 28702693 PRJNA356682_P_NODE_39327_length_247_cov_0.885057_g38636_i0 PRJNA356682 39327 247 0.885057 2.18609079 Agaricomycetes 155619 Fungi Fungi 140 1.27e-36   NR TDL23452.1 50990 g38636 i0 75.6 4.97975708502024 82 20 99.6 0 247 2 938 1019 TDL23452.1 hypothetical protein BD410DRAFT_838937 [Rickenella mellea] diamond 1230 140 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Hymenochaetales Rickenellaceae Rickenella Rickenella mellea
29917057 29917057 PRJNA356682_P_NODE_43871_length_242_cov_0.911243_g43180_i0 PRJNA356682 43871 242 0.911243 2.20520806 Melampsora americana 2182807 Fungi Fungi 124 1.56e-32   NR KAH9817848.1 2182807 g43180 i0 73.6 0.892561983471074 72 19 89.3 0 224 9 169 240 KAH9817848.1 hypothetical protein DFH28DRAFT_960935 [Melampsora americana] diamond 216 124 1 Eukaryota Opisthokonta Fungi Basidiomycota Pucciniomycetes Pucciniales Melampsoraceae Melampsora Melampsora americana

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;