RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA356682 · 2 ✖

analysis 1

  • diamond · 2 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28590862 28590862 PRJNA356682_P_NODE_33027_length_260_cov_1.593583_g32336_i0 PRJNA356682 33027 260 1.593583 4.1433158 Mayamaea pseudoterrestris 2872254 SAR_Eukaryotes SAR_Eukaryotes 67 1.22e-10   NR GKY91104.1 2872254 g32336 i0 61.4 1.01538461538462 44 17 50.8 0 133 2 246 289 GKY91104.1 elongation factor 1-gamma [Mayamaea pseudoterrestris] diamond 264 67 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Mayamaea Mayamaea pseudoterrestris
31338715 31338715 PRJNA356682_P_NODE_22816_length_305_cov_1.284483_g22125_i0 PRJNA356682 22816 305 1.284483 3.91767315 Nitzschia inconspicua 303405 SAR_Eukaryotes SAR_Eukaryotes 100 1.04e-24   NR KAG7373989.1 303405 g22125 i0 47.6 4.90819672131148 103 52 99.3 1 305 3 18 120 KAG7373989.1 50S ribosomal protein L14e [Nitzschia inconspicua] diamond 1497 100 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Bacillariales Bacillariaceae Nitzschia Nitzschia inconspicua

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;