RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_kingdom = "Thermotogati"

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tax_phylum 2

tax_superkingdom 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA356682 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28401295 28401295 PRJNA356682_P_NODE_42846_length_243_cov_0.905882_g42155_i0 PRJNA356682 42846 243 0.905882 2.20129326 Deinococcus indicus 223556 Bacteria Bacteria 108 3.02e-26   NR WP_191301254.1 223556 g42155 i0 92.9 0.691358024691358 56 4 69.1 0 74 241 1 56 WP_191301254.1 hypothetical protein [Deinococcus indicus] diamond 168 108 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus indicus
31243850 31243850 PRJNA356682_P_NODE_37555_length_249_cov_0.875000_g36864_i0 PRJNA356682 37555 249 0.875 2.17875 Deinococcus sp. 6YEL1 47478 Bacteria Bacteria 154 6.98e-43   NR WP_230273767.1 2745870 g36864 i0 97.5 1.95180722891566 81 2 97.6 0 6 248 1 81 WP_230273767.1 peptidoglycan D,D-transpeptidase FtsI family protein [Deinococcus sp. 6YEL10] diamond 486 154 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus sp. 6YEL10
32855861 32855861 PRJNA356682_P_NODE_39420_length_247_cov_0.885057_g38729_i0 PRJNA356682 39420 247 0.885057 2.18609079 Synergistetes bacterium ADurb.BinA166 1852916 Bacteria Bacteria 51.6 5.74e-6   NR OPZ40892.1 1852916 g38729 i0 42.1 0.923076923076923 76 40 92.3 2 228 1 12 83 OPZ40892.1 MAG: hypothetical protein BWY99_00399 [Synergistetes bacterium ADurb.BinA166] diamond 228 51.6 1 Bacteria   Thermotogati Synergistota         Synergistetes bacterium ADurb.BinA166

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;