RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_clade = "Methanomada group"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA356682 · 3 ✖

analysis 1

  • diamond · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29744269 29744269 PRJNA356682_P_NODE_43870_length_242_cov_0.911243_g43179_i0 PRJNA356682 43870 242 0.911243 2.20520806 Methanobrevibacter 2172 Archaea Archaea 156 2.7799999999999992e-43   NR MEE1149620.1 66852 g43179 i0 97.5 3.96694214876033 80 2 99.2 0 3 242 118 197 MEE1149620.1 AAA family ATPase [Methanobrevibacter sp.] diamond 960 156 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.
32051849 32051849 PRJNA356682_P_NODE_43738_length_242_cov_0.911243_g43047_i0 PRJNA356682 43738 242 0.911243 2.20520806 root 1 Root_unresolved Root_unresolved 106 8.43e-25   NR MBX7076496.1 2099680 g43047 i0 82.3 1.53719008264463 62 11 76.9 0 1 186 452 513 MBX7076496.1 F0F1 ATP synthase subunit alpha [Methanobacteriaceae archaeon] diamond 372 106 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   Methanobacteriaceae archaeon
32319841 32319841 PRJNA356682_P_NODE_36919_length_250_cov_0.870056_g36228_i0 PRJNA356682 36919 250 0.870056 2.17514 Methanobrevibacter sp. 66852 Archaea Archaea 150 7.429999999999998e-42   NR MCR5026642.1 66852 g36228 i0 91.6 0.996 83 7 99.6 0 249 1 44 126 MCR5026642.1 MFS transporter [Methanobrevibacter sp.] diamond 249 150 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;