RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA356682" and tax_clade = "Discoba"

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tax_phylum 2

tax_superkingdom 1

tax_clade 1

  • Discoba · 4 ✖

bioproject 1

  • PRJNA356682 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26694882 26694882 PRJNA356682_P_NODE_43121_length_243_cov_0.905882_g42430_i0 PRJNA356682 43121 243 0.905882 2.20129326 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 113 6.28e-27   NR KAJ9470386.1 91374 g42430 i0 67.9 1 81 26 100 0 243 1 615 695 KAJ9470386.1 Intraflagellar transport protein 172-like protein [Diplonema papillatum] diamond 243 113 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
27881623 27881623 PRJNA356682_P_NODE_43765_length_242_cov_0.911243_g43074_i0 PRJNA356682 43765 242 0.911243 2.20520806 Naegleria 5761 Heterolobosea other_Eukaryota 87.4 6.87e-18   NR XP_044562577.1 5763 g43074 i0 61.3 2.34297520661157 62 24 76.9 0 19 204 434 495 XP_044562577.1 uncharacterized protein FDP41_003186 [Naegleria fowleri] diamond 567 87.8 0.995444191343964 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
27959219 27959219 PRJNA356682_P_NODE_43165_length_243_cov_0.905882_g42474_i0 PRJNA356682 43165 243 0.905882 2.20129326 Bodo saltans 75058 Euglenozoa other_Eukaryota 75.9 8.12e-14   NR CUG89927.1 75058 g42474 i0 50.7 0.901234567901235 73 35 90.1 1 11 229 2931 3002 CUG89927.1 ankyrin repeat protein, putative [Bodo saltans] diamond 219 75.9 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Eubodonida Bodonidae Bodo Bodo saltans
28134408 28134408 PRJNA356682_P_NODE_34245_length_256_cov_1.683060_g33554_i0 PRJNA356682 34245 256 1.68306 4.3086336 root 1 Root_unresolved Root_unresolved 72.8 1.15e-12   NR CAG4719435.1 5763 g33554 i0 46.8 3.65625 77 40 89.1 1 27 254 1285 1361 CAG4719435.1 unnamed protein product, partial [Naegleria fowleri] diamond 936 72.8 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;