RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA352850" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA352850 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26821820 26821820 PRJNA352850_P_NODE_56721_length_312_cov_2.121673_g53888_i0 PRJNA352850 56721 312 2.121673 6.61961976 Sorangium cellulosum 56 Bacteria Bacteria 103 5.8e-24   NR WP_275936215.1 56 g53888 i0 81.1 1.52884615384615 53 10 51 0 311 153 309 361 WP_275936215.1 RHS repeat-associated core domain-containing protein, partial [Sorangium cellulosum] diamond 477 103 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae Sorangium Sorangium cellulosum
27643707 27643707 PRJNA352850_P_NODE_80724_length_248_cov_1.829146_g77891_i0 PRJNA352850 80724 248 1.829146 4.53628208 Anaeromyxobacter dehalogenans 161493 Bacteria Bacteria 55.8 1.78e-7   NR WP_232287436.1 161493 g77891 i0 43.3 1.62096774193548 67 34 81 3 246 46 75 137 WP_232287436.1 hypothetical protein [Anaeromyxobacter dehalogenans] diamond 402 55.8 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Anaeromyxobacteraceae Anaeromyxobacter Anaeromyxobacter dehalogenans
29600786 29600786 PRJNA352850_P_NODE_6250_length_1557_cov_2.805703_g4428_i0 PRJNA352850 6250 1557 2.805703 43.68479571 Nannocystis pusilla 889268 Bacteria Bacteria 132 6.01e-29   NR WP_224195048.1 889268 g4428 i0 33.3 0.919075144508671 237 150 45.5 4 1555 848 302 531 WP_224195048.1 hypothetical protein [Nannocystis pusilla] diamond 1431 132 1 Bacteria   Pseudomonadati Myxococcota   Nannocystales Nannocystaceae Nannocystis Nannocystis pusilla
31781420 31781420 PRJNA352850_P_NODE_15377_length_788_cov_5.648173_g12750_i0 PRJNA352850 15377 788 5.648173 44.50760324 Myxococcales bacterium 2026763 Bacteria Bacteria 117 4.97e-28   NR HBQ17276.1 2026763 g12750 i0 32.6 0.852791878172589 224 143 84.5 5 3 668 20 237 HBQ17276.1 N-formylglutamate amidohydrolase [Myxococcales bacterium] diamond 672 117 1 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales     Myxococcales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;