RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA352850" and tax_phylum = "Hemichordata"

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tax_superkingdom 1

tax_phylum 1

  • Hemichordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA352850 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
395137 395137 PRJNA352850_P_NODE_24081_length_569_cov_2.740385_g21269_i0 PRJNA352850 24081 569 2.740385 15.59279065 Hemichordata 10219 Hemichordata other_Eukaryota 300 1.52e-100   NR XP_070539404.1 63121 g21269 i0 73.5 15.9437609841828 189 49 99.6 1 567 1 51 238 XP_070539404.1 large ribosomal subunit protein uL2 [Ptychodera flava] diamond 9072 300 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Ptychoderidae Ptychodera Ptychodera flava
24622702 24622702 PRJNA352850_P_NODE_69900_length_269_cov_0.927273_g67067_i0 PRJNA352850 69900 269 0.927273 2.49436437 Saccoglossus kowalevskii 10224 Hemichordata other_Eukaryota 119 6.63e-30   NR XP_002731867.1 10224 g67067 i0 74.1 0.903345724907063 81 20 90.3 1 243 1 296 375 XP_002731867.1 PREDICTED: 60S ribosomal protein L3-like [Saccoglossus kowalevskii] diamond 243 119 1 Eukaryota Opisthokonta Metazoa Hemichordata Enteropneusta   Harrimaniidae Saccoglossus Saccoglossus kowalevskii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;