RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA352850" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA352850 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26853542 26853542 PRJNA352850_P_NODE_72861_length_263_cov_0.953271_g70028_i0 PRJNA352850 72861 263 0.953271 2.50710273 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 46.2 0.00273   NR XP_004348706.1 1257118 g70028 i0 40.8 1.11787072243346 49 29 55.9 0 239 93 338 386 XP_004348706.1 uncharacterized protein ACA1_126730 [Acanthamoeba castellanii str. Neff] diamond 294 46.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27422709 27422709 PRJNA352850_P_NODE_33903_length_448_cov_3.428571_g31073_i0 PRJNA352850 33903 448 3.428571 15.35999808 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 65.9 3.19e-9   NR XP_004339528.1 1257118 g31073 i0 37.1 0.703125 105 61 67 1 397 98 2745 2849 XP_004339528.1 HEAT repeat domain containing protein [Acanthamoeba castellanii str. Neff] diamond 315 65.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
27895973 27895973 PRJNA352850_P_NODE_28805_length_502_cov_5.889625_g25979_i0 PRJNA352850 28805 502 5.889625 29.5659175 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 208 4.33e-61   NR XP_004358064.1 1257118 g25979 i0 70.3 0.884462151394422 148 43 87.8 1 17 457 431 578 XP_004358064.1 HEAT repeat containing protein, partial [Acanthamoeba castellanii str. Neff] diamond 444 208 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29853763 29853763 PRJNA352850_P_NODE_46271_length_360_cov_4.064309_g43438_i0 PRJNA352850 46271 360 4.064309 14.6315124 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 114 3.4200000000000003e-29   NR XP_004352065.1 1257118 g43438 i0 52.1 1.00833333333333 121 56 100 2 1 360 54 173 XP_004352065.1 ribosomal protein S7e, putative [Acanthamoeba castellanii str. Neff] diamond 363 114 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;