RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA352850" and tax_phylum = "Bacillariophyta"

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tax_superkingdom 1

tax_phylum 1

  • Bacillariophyta · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA352850 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28306548 28306548 PRJNA352850_P_NODE_10886_length_1016_cov_4.389866_g8531_i0 PRJNA352850 10886 1016 4.389866 44.60103856 Skeletonema marinoi 267567 SAR_Eukaryotes SAR_Eukaryotes 59.3 1.4e-5   NR KAK1739246.1 267567 g8531 i0 32.3 0.56988188976378 96 63 28.1 2 380 96 450 544 KAK1739246.1 DnaJ domain-containing protein [Skeletonema marinoi] diamond 579 59.3 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Skeletonemataceae Skeletonema Skeletonema marinoi
28748549 28748549 PRJNA352850_P_NODE_62707_length_290_cov_2.489627_g59874_i0 PRJNA352850 62707 290 2.489627 7.2199183 Thalassiosira oceanica 159749 SAR_Eukaryotes SAR_Eukaryotes 89.4 3.81e-20   NR EJK48333.1 159749 g59874 i0 66.7 3.17586206896552 69 23 71.4 0 5 211 72 140 EJK48333.1 hypothetical protein THAOC_32880, partial [Thalassiosira oceanica] diamond 921 89.4 1 Eukaryota Sar   Bacillariophyta Coscinodiscophyceae Thalassiosirales Thalassiosiraceae Thalassiosira Thalassiosira oceanica
31988492 31988492 PRJNA352850_P_NODE_24558_length_561_cov_4.990234_g21743_i0 PRJNA352850 24558 561 4.990234 27.99521274 Phaeodactylum 2849 SAR_Eukaryotes SAR_Eukaryotes 303 3.92e-93   NR ACS35537.1 2850 g21743 i0 79 1.98930481283422 186 38 99.5 1 3 560 108 292 ACS35537.1 myosin A [Phaeodactylum tricornutum] diamond 1116 303 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Phaeodactylaceae Phaeodactylum Phaeodactylum tricornutum
32494990 32494990 PRJNA352850_P_NODE_64439_length_285_cov_1.533898_g61606_i0 PRJNA352850 64439 285 1.533898 4.3716093 Bacillariophyceae 33849 SAR_Eukaryotes SAR_Eukaryotes 115 2.2e-29   NR GAX21982.1 1519565 g61606 i0 62 1.94736842105263 92 35 96.8 0 281 6 45 136 GAX21982.1 large subunit ribosomal protein L7e [Fistulifera solaris] diamond 555 115 1 Eukaryota Sar   Bacillariophyta Bacillariophyceae Naviculales Naviculaceae Fistulifera Fistulifera solaris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;