RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA352850" and tax_kingdom = "Thermotogati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Thermotogati · 3 ✖

bioproject 1

  • PRJNA352850 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8048133 8048133 PRJNA352850_P_NODE_16987_length_731_cov_4.673021_g14312_i0 PRJNA352850 16987 731 4.673021 34.15978351 Deinococcus antarcticus 1298767 Bacteria Bacteria 164 4.7799999999999986e-43   NR WP_380080996.1 1298767 g14312 i0 83.5 0.348837209302326 85 14 34.9 0 3 257 104 188 WP_380080996.1 malto-oligosyltrehalose trehalohydrolase [Deinococcus antarcticus] diamond 255 164 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus antarcticus
31672176 31672176 PRJNA352850_P_NODE_63437_length_288_cov_1.665272_g60604_i0 PRJNA352850 63437 288 1.665272 4.79598336 root 1 Root_unresolved Root_unresolved 47.4 6.76e-4   NR GAA6742159.1 56957 g60604 i0 63.6 1.25 33 12 34.4 0 74 172 2 34 GAA6742159.1 hypothetical protein Thermus77359_23470 [Thermus oshimai] diamond 360 47.8 0.99163179916318 Bacteria   Thermotogati Deinococcota Deinococci Thermales Thermaceae Thermus Thermus oshimai
32761451 32761451 PRJNA352850_P_NODE_43480_length_376_cov_3.134557_g40647_i0 PRJNA352850 43480 376 3.134557 11.78593432 Deinococcus piscis 394230 Bacteria Bacteria 200 1.17e-62   NR WP_189642145.1 394230 g40647 i0 87.8 0.917553191489362 115 14 91.8 0 4 348 13 127 WP_189642145.1 aspartate/glutamate racemase family protein [Deinococcus piscis] diamond 345 200 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus piscis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;