RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA352610" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 29 ✖

tax_kingdom 1

bioproject 1

  • PRJNA352610 · 29 ✖

analysis 1

  • diamond · 29 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15098311 15098311 PRJNA352610_P_NODE_22732_length_264_cov_1.167539_g22671_i0 PRJNA352610 22732 264 1.167539 3.08230296 Hamadaea sp. 2024425 Bacteria Bacteria 90.5 7.56e-19   NR WP_290863459.1 2024425 g22671 i0 53.5 4.44318181818182 86 38 96.6 2 259 5 128 212 WP_290863459.1 MFS transporter [Hamadaea sp.] diamond 1173 90.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Hamadaea Hamadaea sp.
26726190 26726190 PRJNA352610_P_NODE_14821_length_318_cov_0.942857_g14760_i0 PRJNA352610 14821 318 0.942857 2.99828526 Acidimicrobiaceae bacterium 2024894 Bacteria Bacteria 101 5.02e-24   NR MBC83285.1 2024894 g14760 i0 48 0.943396226415094 100 42 94.3 2 315 16 113 202 MBC83285.1 hypothetical protein [Acidimicrobiaceae bacterium] diamond 300 101 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Acidimicrobiaceae   Acidimicrobiaceae bacterium
26790062 26790062 PRJNA352610_P_NODE_26101_length_250_cov_0.870056_g26040_i0 PRJNA352610 26101 250 0.870056 2.17514 Eggerthellaceae bacterium 1972561 Bacteria Bacteria 94 1.69e-22   NR MCL1797062.1 1972561 g26040 i0 51.8 0.996 83 40 99.6 0 249 1 12 94 MCL1797062.1 hypothetical protein [Eggerthellaceae bacterium] diamond 249 94 1 Bacteria   Bacillati Actinomycetota Coriobacteriia Eggerthellales Eggerthellaceae   Eggerthellaceae bacterium
27074772 27074772 PRJNA352610_P_NODE_27502_length_248_cov_0.880000_g27441_i0 PRJNA352610 27502 248 0.88 2.1824 Yinghuangia seranimata 408067 Bacteria Bacteria 45.4 0.00432   NR WP_281470510.1 408067 g27441 i0 40 1.86290322580645 60 35 72.6 1 247 68 127 185 WP_281470510.1 ankyrin repeat domain-containing protein [Yinghuangia seranimata] diamond 462 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Yinghuangia Yinghuangia seranimata
27264505 27264505 PRJNA352610_P_NODE_14683_length_319_cov_1.089431_g14622_i0 PRJNA352610 14683 319 1.089431 3.47528489 Geodermatophilus normandii 1137989 Bacteria Bacteria 78.2 1.52e-14   NR WP_204264519.1 1137989 g14622 i0 42.7 0.90282131661442 96 55 90.3 0 317 30 162 257 WP_204264519.1 TauD/TfdA family dioxygenase [Geodermatophilus normandii] diamond 288 78.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Geodermatophilales Geodermatophilaceae Geodermatophilus Geodermatophilus normandii
27296033 27296033 PRJNA352610_P_NODE_12863_length_335_cov_1.175573_g12802_i0 PRJNA352610 12863 335 1.175573 3.93816955 Mycobacteriaceae bacterium 2448780 Bacteria Bacteria 106 1.84e-25   NR NBP86788.1 2448780 g12802 i0 46.8 2.98208955223881 111 59 99.4 0 334 2 127 237 NBP86788.1 class I SAM-dependent methyltransferase [Mycobacteriaceae bacterium] diamond 999 106 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Mycobacteriaceae   Mycobacteriaceae bacterium
27611981 27611981 PRJNA352610_P_NODE_19364_length_285_cov_0.801887_g19303_i0 PRJNA352610 19364 285 0.801887 2.28537795 Gaiellales bacterium 2093372 Bacteria Bacteria 46.2 0.00351   NR MDX6533954.1 2093372 g19303 i0 38.7 0.789473684210526 75 39 73.7 3 3 212 96 168 MDX6533954.1 hypothetical protein [Gaiellales bacterium] diamond 225 46.2 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Gaiellales     Gaiellales bacterium
28211581 28211581 PRJNA352610_P_NODE_29406_length_245_cov_0.895349_g29345_i0 PRJNA352610 29406 245 0.895349 2.19360505 Actinomycetota bacterium 2900548 Bacteria Bacteria 65.1 6.49e-11   NR HEX8100744.1 2900548 g29345 i0 38.5 5.82857142857143 78 48 95.5 0 11 244 43 120 HEX8100744.1 endonuclease VII domain-containing protein [Actinomycetota bacterium] diamond 1428 65.1 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
28211591 28211591 PRJNA352610_P_NODE_6906_length_425_cov_1.269886_g6845_i0 PRJNA352610 6906 425 1.269886 5.3970155 Actinoplanes regularis 52697 Bacteria Bacteria 124 4.749999999999999e-31   NR WP_089293525.1 52697 g6845 i0 52.3 1.86352941176471 132 52 93.2 2 425 30 31 151 WP_089293525.1 aldose epimerase family protein [Actinoplanes regularis] diamond 792 124 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Actinoplanes Actinoplanes regularis
28306542 28306542 PRJNA352610_P_NODE_9126_length_382_cov_0.996764_g9065_i0 PRJNA352610 9126 382 0.996764 3.80763848 Streptomyces 1883 Bacteria Bacteria 88.2 1.62e-17   NR WP_051720655.1 1883 g9065 i0 53.5 2.70157068062827 86 39 67.5 1 113 370 80 164 WP_051720655.1 MULTISPECIES: ATP-grasp domain-containing protein [Streptomyces] diamond 1032 88.2 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces  
28338133 28338133 PRJNA352610_P_NODE_28886_length_246_cov_0.838150_g28825_i0 PRJNA352610 28886 246 0.83815 2.061849 Streptacidiphilus monticola 2161674 Bacteria Bacteria 43.5 0.0199   NR MFD0330360.1 2161674 g28825 i0 46.3 0.817073170731707 67 29 79.3 3 48 242 101 162 MFD0330360.1 carbohydrate-binding protein [Streptacidiphilus monticola] diamond 201 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptacidiphilus Streptacidiphilus monticola
28513108 28513108 PRJNA352610_P_NODE_31347_length_242_cov_0.911243_g31286_i0 PRJNA352610 31347 242 0.911243 2.20520806 Bacteria 2 Bacteria Bacteria 56.6 3.86e-7   NR WP_155848813.1 208444 g31286 i0 51.9 1.22727272727273 54 26 66.9 0 1 162 80 133 WP_155848813.1 hypothetical protein [Amycolatopsis vancoresmycina] diamond 297 57 0.992982456140351 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Amycolatopsis Amycolatopsis vancoresmycina
29127641 29127641 PRJNA352610_P_NODE_129_length_1601_cov_3.007853_g120_i0 PRJNA352610 129 1601 3.007853 48.15572653 Actinomycetota bacterium 2900548 Bacteria Bacteria 50.4 0.0182   NR MEC7001195.1 2900548 g120 i0 30.9 0.260462211118051 139 74 22.9 6 1444 1079 274 407 MEC7001195.1 hypothetical protein [Actinomycetota bacterium] diamond 417 50.4 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
29222327 29222327 PRJNA352610_P_NODE_19329_length_285_cov_1.075472_g19268_i0 PRJNA352610 19329 285 1.075472 3.0650952 Pilimelia sp. 2605714 Bacteria Bacteria 55.8 6.33e-7   NR HWH00255.1 2605714 g19268 i0 42.5 0.768421052631579 73 41 75.8 1 60 275 83 155 HWH00255.1 alpha-ketoglutarate-dependent dioxygenase AlkB [Pilimelia sp.] diamond 219 55.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Pilimelia Pilimelia sp.
29365685 29365685 PRJNA352610_P_NODE_17409_length_297_cov_1.651786_g17348_i0 PRJNA352610 17409 297 1.651786 4.90580442 Bacteria 2 Bacteria Bacteria 110 1.13e-26   NR WP_226352717.1 2846759 g17348 i0 53.7 7.61616161616162 95 42 96 1 3 287 163 255 WP_226352717.1 NADP-dependent oxidoreductase [Pseudonocardia sp. ICBG601] diamond 2262 110 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Pseudonocardia Pseudonocardia sp. ICBG601
29474445 29474445 PRJNA352610_P_NODE_11230_length_353_cov_0.957143_g11169_i0 PRJNA352610 11230 353 0.957143 3.37871479 Demequina sp. 2050685 Bacteria Bacteria 79.3 9.28e-15   NR MCR6712026.1 2050685 g11169 i0 65.5 0.46742209631728 55 19 46.7 0 352 188 267 321 MCR6712026.1 hypothetical protein [Demequina sp.] diamond 165 79.3 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Demequinaceae Demequina Demequina sp.
29727065 29727065 PRJNA352610_P_NODE_24290_length_255_cov_1.225275_g24229_i0 PRJNA352610 24290 255 1.225275 3.12445125 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 62.8 2.77e-9   NR HVM55672.1 2201156 g24229 i0 44.8 1.02352941176471 87 37 98.8 5 255 4 133 211 HVM55672.1 nucleoside hydrolase [Acidimicrobiales bacterium] diamond 261 62.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
30454174 30454174 PRJNA352610_P_NODE_18073_length_293_cov_1.050000_g18012_i0 PRJNA352610 18073 293 1.05 3.0765 Kitasatospora sp. NPDC 1871188 Bacteria Bacteria 66.6 2.77e-10   NR WP_350772165.1 3154519 g18012 i0 38.2 2.49829351535836 89 55 91.1 0 273 7 675 763 WP_350772165.1 amino acid adenylation domain-containing protein [Kitasatospora sp. NPDC001527] diamond 732 66.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora sp. NPDC001527
30548660 30548660 PRJNA352610_P_NODE_12833_length_335_cov_1.557252_g12772_i0 PRJNA352610 12833 335 1.557252 5.2167942 Streptomyces eurythermus 42237 Bacteria Bacteria 55.5 3.44e-6   NR WP_381562017.1 42237 g12772 i0 32.7 1.8089552238806 101 66 90.4 1 33 335 131 229 WP_381562017.1 cytochrome P450 family protein [Streptomyces eurythermus] diamond 606 55.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces eurythermus
30580060 30580060 PRJNA352610_P_NODE_20633_length_277_cov_1.102941_g20572_i0 PRJNA352610 20633 277 1.102941 3.05514657 Streptomyces gibsoniae 3075529 Bacteria Bacteria 44.7 0.0121   NR WP_311698039.1 3075529 g20572 i0 36.9 0.703971119133574 65 40 69.3 1 19 210 369 433 WP_311698039.1 Pls/PosA family non-ribosomal peptide synthetase [Streptomyces gibsoniae] diamond 195 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces gibsoniae
30643342 30643342 PRJNA352610_P_NODE_26153_length_250_cov_0.864407_g26092_i0 PRJNA352610 26153 250 0.864407 2.1610175 Cellulomonas sp. 40001 Bacteria Bacteria 43.1 0.0298   NR HEY0119421.1 40001 g26092 i0 35.4 0.78 65 39 74.4 1 198 13 371 435 HEY0119421.1 DUF222 domain-containing protein [Cellulomonas sp.] diamond 195 43.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Cellulomonadaceae Cellulomonas Cellulomonas sp.
30896422 30896422 PRJNA352610_P_NODE_21254_length_273_cov_1.155000_g21193_i0 PRJNA352610 21254 273 1.155 3.15315 Streptomyces sp. SID1 2690252 Bacteria Bacteria 53.1 1.14e-5   NR WP_164262650.1 2706028 g21193 i0 50 1.26373626373626 70 31 73.6 3 73 273 43 111 WP_164262650.1 ATP-grasp domain-containing protein [Streptomyces sp. SID10853] diamond 345 53.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. SID10853
31148580 31148580 PRJNA352610_P_NODE_13435_length_329_cov_1.964844_g13374_i0 PRJNA352610 13435 329 1.964844 6.46433676 Microlunatus panaciterrae 400768 Bacteria Bacteria 58.9 7.06e-8   NR WP_204916798.1 400768 g13374 i0 51.7 1.06686930091185 58 26 52.9 1 77 250 134 189 WP_204916798.1 SOUL family heme-binding protein [Microlunatus panaciterrae] diamond 351 58.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae Microlunatus Microlunatus panaciterrae
31148612 31148612 PRJNA352610_P_NODE_4775_length_489_cov_1.447115_g4714_i0 PRJNA352610 4775 489 1.447115 7.07639235 Nocardia puris 208602 Bacteria Bacteria 79 9.58e-14   NR WP_195124445.1 208602 g4714 i0 51.9 2.01226993865031 79 36 48.5 1 2 238 86 162 WP_195124445.1 cation:proton antiporter [Nocardia puris] diamond 984 79 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Nocardiaceae Nocardia Nocardia puris
31482720 31482720 PRJNA352610_P_NODE_28016_length_247_cov_0.885057_g27955_i0 PRJNA352610 28016 247 0.885057 2.18609079 FCB group 1783270 Bacteria Bacteria 75.9 8.4e-14   NR HXY91285.1 2080302 g27955 i0 62.1 3.41295546558704 58 20 70.4 1 237 64 486 541 HXY91285.1 AMP-binding protein [Acidimicrobiia bacterium] diamond 843 76.6 0.990861618798956 Bacteria   Bacillati Actinomycetota Acidimicrobiia       Acidimicrobiia bacterium
31876311 31876311 PRJNA352610_P_NODE_11157_length_354_cov_0.964413_g11096_i0 PRJNA352610 11157 354 0.964413 3.41402202 Actinomycetota bacterium 2900548 Bacteria Bacteria 52 5.48e-5   NR MBX3284814.1 2900548 g11096 i0 35 1.72881355932203 103 59 83.1 4 330 37 35 134 MBX3284814.1 ankyrin repeat domain-containing protein [Actinomycetota bacterium] diamond 612 52 1 Bacteria   Bacillati Actinomycetota         Actinomycetota bacterium
32161415 32161415 PRJNA352610_P_NODE_26358_length_249_cov_0.875000_g26297_i0 PRJNA352610 26358 249 0.875 2.17875 Leucobacter ruminantium 1289170 Bacteria Bacteria 121 3.6499999999999997e-31   NR WP_208044399.1 1289170 g26297 i0 79 0.975903614457831 81 12 91.6 1 2 229 9 89 WP_208044399.1 ABC transporter substrate-binding protein [Leucobacter ruminantium] diamond 243 121 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Microbacteriaceae Leucobacter Leucobacter ruminantium
32635232 32635232 PRJNA352610_P_NODE_19540_length_284_cov_0.862559_g19479_i0 PRJNA352610 19540 284 0.862559 2.44966756 Microthrixaceae bacterium 2497627 Bacteria Bacteria 44.3 0.0157   NR MFV0315796.1 2497627 g19479 i0 44 0.528169014084507 50 25 49.6 1 20 160 201 250 MFV0315796.1 GDSL-type esterase/lipase family protein [Microthrixaceae bacterium] diamond 150 44.3 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales Microthrixaceae   Microthrixaceae bacterium
32761421 32761421 PRJNA352610_P_NODE_24880_length_251_cov_1.674157_g24819_i0 PRJNA352610 24880 251 1.674157 4.20213407 Thermoleophilaceae bacterium 2732252 Bacteria Bacteria 56.6 2.23e-7   NR MFL5865810.1 2732252 g24819 i0 41.4 2.00796812749004 87 35 98 4 247 2 78 153 MFL5865810.1 class I SAM-dependent methyltransferase [Thermoleophilaceae bacterium] diamond 504 56.6 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Thermoleophilales Thermoleophilaceae   Thermoleophilaceae bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;