RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA348537" and tax_phylum = "Pseudomonadota"

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tax_superkingdom 1

tax_phylum 1

  • Pseudomonadota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA348537 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28432842 28432842 PRJNA348537_S_NODE_1666_length_227_cov_3.213542_g1620_i0 PRJNA348537 1666 227 3.213542 7.29474034 Vibrio mimicus 674 Bacteria Bacteria 42.7 0.0294   NR WP_070383176.1 674 g1620 i0 35.4 0.859030837004405 65 35 81.9 2 8 193 7 67 WP_070383176.1 OmpA family protein [Vibrio mimicus] diamond 195 42.7 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Vibrionales Vibrionaceae Vibrio Vibrio mimicus
30011726 30011726 PRJNA348537_S_NODE_1031_length_284_cov_196.706827_g985_i0 PRJNA348537 1031 284 196.706827 558.64738868 Porphyrobacter sp. GA68 2883480 Bacteria Bacteria 92.4 1.7e-19   NR WP_228244238.1 2883480 g985 i0 98 0.517605633802817 49 1 51.8 0 283 137 9 57 WP_228244238.1 alpha/beta fold hydrolase [Porphyrobacter sp. GA68] diamond 147 92.4 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. GA68
30359615 30359615 PRJNA348537_S_NODE_592_length_357_cov_13.633540_g546_i0 PRJNA348537 592 357 13.63354 48.6717378 Salmonella enterica 28901 Bacteria Bacteria 41.6 0.0493   NR WP_231233012.1 28901 g546 i0 35.4 0.831932773109244 99 24 79 6 310 29 17 80 WP_231233012.1 hypothetical protein, partial [Salmonella enterica] diamond 297 41.6 1 Bacteria   Pseudomonadati Pseudomonadota Gammaproteobacteria Enterobacterales Enterobacteriaceae Salmonella Salmonella enterica
31844684 31844684 PRJNA348537_S_NODE_617_length_350_cov_152.374603_g571_i0 PRJNA348537 617 350 152.374603 533.3111105 Porphyrobacter sp. GA68 2883480 Bacteria Bacteria 95.5 3.07e-20   NR WP_228244238.1 2883480 g571 i0 98 0.437142857142857 51 1 43.7 0 2 154 9 59 WP_228244238.1 alpha/beta fold hydrolase [Porphyrobacter sp. GA68] diamond 153 95.5 1 Bacteria   Pseudomonadati Pseudomonadota Alphaproteobacteria Sphingomonadales Erythrobacteraceae Porphyrobacter Porphyrobacter sp. GA68

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;