RNAquarium Metadata Server
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contig_metadata

2 rows where analysis = "diamond", bioproject = "PRJNA348537" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA348537 · 2 ✖

analysis 1

  • diamond · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28938058 28938058 PRJNA348537_S_NODE_4528_length_152_cov_2.410256_g4482_i0 PRJNA348537 4528 152 2.410256 3.66358912 Hyla sarda 327740 Chordata Chordata 60.1 6.41e-9   NR XP_056389893.1 327740 g4482 i0 71.1 4.77631578947368 38 10 73 1 39 149 164 201 XP_056389893.1 ORM1-like protein 1 isoform X1 [Hyla sarda] diamond 726 60.1 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Hylidae Hyla Hyla sarda
29253460 29253460 PRJNA348537_S_NODE_569_length_364_cov_5.231003_g523_i0 PRJNA348537 569 364 5.231003 19.04085092 Erpetoichthys calabaricus 27687 Chordata Chordata 139 2.9199999999999996e-37   NR XP_051791274.1 27687 g523 i0 78.3 5.30769230769231 92 19 75 1 20 292 115 206 XP_051791274.1 E3 SUMO-protein ligase ZBED1-like [Erpetoichthys calabaricus] diamond 1932 139 1 Eukaryota Opisthokonta Metazoa Chordata Cladistia Polypteriformes Polypteridae Erpetoichthys Erpetoichthys calabaricus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;