RNAquarium Metadata Server
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contig_metadata

4 rows where analysis = "diamond", bioproject = "PRJNA345071" and tax_phylum = "Heterolobosea"

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tax_superkingdom 1

tax_phylum 1

  • Heterolobosea · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA345071 · 4 ✖

analysis 1

  • diamond · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
23345377 23345377 PRJNA345071_P_NODE_9039_length_248_cov_0.891429_g8999_i0 PRJNA345071 9039 248 0.891429 2.21074392 Naegleria 5761 Heterolobosea other_Eukaryota 127 3.18e-32   NR XP_002676338.1 5762 g8999 i0 76.8 2.9758064516129 82 19 99.2 0 247 2 175 256 XP_002676338.1 uncharacterized protein NAEGRDRAFT_34100 [Naegleria gruberi] diamond 738 127 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria gruberi
27313427 27313427 PRJNA345071_P_NODE_8923_length_248_cov_1.337143_g8883_i0 PRJNA345071 8923 248 1.337143 3.31611464 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 118 1.04e-28   NR CAG4715788.1 5763 g8883 i0 69.5 3.96774193548387 82 25 99.2 0 246 1 387 468 CAG4715788.1 unnamed protein product [Naegleria fowleri] diamond 984 119 0.991596638655462 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
28874761 28874761 PRJNA345071_P_NODE_2068_length_395_cov_1.447205_g2028_i0 PRJNA345071 2068 395 1.447205 5.71645975 Acrasis kona 1008807 Heterolobosea other_Eukaryota 150 5.85e-42   NR KAL0488086.1 1008807 g2028 i0 53.5 1.9746835443038 129 57 96.5 2 393 13 174 301 KAL0488086.1 cathepsin B [Acrasis kona] diamond 780 150 1 Eukaryota Discoba   Heterolobosea     Acrasidae Acrasis Acrasis kona
29285114 29285114 PRJNA345071_P_NODE_7649_length_253_cov_0.866667_g7609_i0 PRJNA345071 7649 253 0.866667 2.19266751 Naegleria fowleri 5763 Heterolobosea other_Eukaryota 50.1 1.07e-4   NR XP_044560461.1 5763 g7609 i0 46.5 0.509881422924901 43 23 51 0 2 130 325 367 XP_044560461.1 uncharacterized protein FDP41_005075 [Naegleria fowleri] diamond 129 50.1 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;