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contig_metadata

29 rows where analysis = "diamond", bioproject = "PRJNA345071" and tax_phylum = "Chordata"

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tax_superkingdom 1

tax_phylum 1

  • Chordata · 29 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA345071 · 29 ✖

analysis 1

  • diamond · 29 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
393436 393436 PRJNA345071_P_NODE_5621_length_280_cov_1.961353_g5581_i0 PRJNA345071 5621 280 1.961353 5.4917884 Styela clava 7725 Chordata Chordata 125 1.37e-34   NR XP_039260353.1 7725 g5581 i0 71.8 1.67142857142857 78 22 83.6 0 234 1 1 78 XP_039260353.1 40S ribosomal protein S24-like isoform X2 [Styela clava] diamond 468 125 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Stolidobranchia Styelidae Styela Styela clava
1668031 1668031 PRJNA345071_P_NODE_5802_length_277_cov_1.799020_g5762_i0 PRJNA345071 5802 277 1.79902 4.9832854 Metazoa 33208 Chordata Chordata 135 1.48e-34   NR XP_002121036.1 7719 g5762 i0 72.5 86.2093862815885 91 25 98.6 0 275 3 44 134 XP_002121036.1 stress-70 protein, mitochondrial-like [Ciona intestinalis] diamond 23880 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Cionidae Ciona Ciona intestinalis
13146939 13146939 PRJNA345071_P_NODE_2831_length_352_cov_1.118280_g2791_i0 PRJNA345071 2831 352 1.11828 3.9363456 Branchiostoma 7737 Chordata Chordata 171 1.0399999999999999e-46   NR XP_035678834.1 7739 g2791 i0 70.2 2.91477272727273 114 34 97.2 0 350 9 587 700 XP_035678834.1 alanine--tRNA ligase, cytoplasmic-like [Branchiostoma floridae] diamond 1026 171 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
17648005 17648005 PRJNA345071_P_NODE_3714_length_321_cov_2.056452_g3674_i0 PRJNA345071 3714 321 2.056452 6.60121092 Metazoa 33208 Chordata Chordata 156 1.7e-46   NR CAB3265712.1 59560 g3674 i0 77.1 6.89719626168224 105 22 96.3 1 321 13 36 140 CAB3265712.1 60S ribosomal protein L26-like [Phallusia mammillata] diamond 2214 156 1 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Phlebobranchia Ascidiidae Phallusia Phallusia mammillata
20794721 20794721 PRJNA345071_P_NODE_3217_length_337_cov_1.962121_g3177_i0 PRJNA345071 3217 337 1.962121 6.61234777 Metazoa 33208 Chordata Chordata 193 1.66e-59   NR XP_035680771.1 7739 g3177 i0 85.7 107.679525222552 112 16 99.7 0 2 337 17 128 XP_035680771.1 40S ribosomal protein S3 [Branchiostoma floridae] diamond 36288 194 0.994845360824742 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
24619561 24619561 PRJNA345071_P_NODE_5940_length_275_cov_1.183168_g5900_i0 PRJNA345071 5940 275 1.183168 3.253712 Metazoa 33208 Chordata Chordata 152 9.34e-41   NR XP_032831929.1 7757 g5900 i0 76.9 4.93090909090909 91 21 99.3 0 3 275 670 760 XP_032831929.1 aconitate hydratase, mitochondrial isoform X1 [Petromyzon marinus] diamond 1356 153 0.993464052287582 Eukaryota Opisthokonta Metazoa Chordata Hyperoartia Petromyzontiformes Petromyzontidae Petromyzon Petromyzon marinus
25296615 25296615 PRJNA345071_P_NODE_6040_length_273_cov_2.190000_g6000_i0 PRJNA345071 6040 273 2.19 5.9787 Eubalaena glacialis 27606 Chordata Chordata 135 1.71e-37   NR XP_061048735.1 27606 g6000 i0 79.2 71.7142857142857 77 16 84.6 0 271 41 140 216 XP_061048735.1 small ribosomal subunit protein eS4, X isoform-like [Eubalaena glacialis] diamond 19578 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Chordata Mammalia Artiodactyla Balaenidae Eubalaena Eubalaena glacialis
26853474 26853474 PRJNA345071_P_NODE_941_length_543_cov_3.051064_g901_i0 PRJNA345071 941 543 3.051064 16.56727752 Sorex araneus 42254 Chordata Chordata 162 5.01e-46   NR XP_054993567.1 42254 g901 i0 59.6 20.6850828729282 156 47 85.6 4 472 8 124 264 XP_054993567.1 60S ribosomal protein L22 isoform X1 [Sorex araneus] diamond 11232 162 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Eulipotyphla Soricidae Sorex Sorex araneus
27313425 27313425 PRJNA345071_P_NODE_1423_length_460_cov_2.793282_g1383_i0 PRJNA345071 1423 460 2.793282 12.8490972 Metazoa 33208 Chordata Chordata 246 6.75e-78   NR XP_069065896.1 8319 g1383 i0 78.3 64.4282608695652 152 33 99.1 0 458 3 90 241 XP_069065896.1 ribosomal protein uL3-like [Pleurodeles waltl] diamond 29637 247 0.995951417004049 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
27391024 27391024 PRJNA345071_P_NODE_7423_length_255_cov_1.153846_g7383_i0 PRJNA345071 7423 255 1.153846 2.9423073 Hypanus sabinus 79690 Chordata Chordata 48.5 4.06e-4   NR XP_059842763.1 79690 g7383 i0 34.5 2.45882352941176 55 36 64.7 0 166 2 23 77 XP_059842763.1 mucin-2-like [Hypanus sabinus] diamond 627 48.5 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus
27408251 27408251 PRJNA345071_P_NODE_6523_length_266_cov_1.616580_g6483_i0 PRJNA345071 6523 266 1.61658 4.3001028 Squamata 8509 Chordata Chordata 110 7.94e-26   NR KAK9393960.1 8729 g6483 i0 56.3 12.5075187969925 87 38 98.1 0 5 265 146 232 KAK9393960.1 pyruvate kinase PKM [Crotalus adamanteus] diamond 3327 110 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Viperidae Crotalus Crotalus adamanteus
27580216 27580216 PRJNA345071_P_NODE_4664_length_296_cov_1.717489_g4624_i0 PRJNA345071 4664 296 1.717489 5.08376744 Pterocles gutturalis 240206 Chordata Chordata 62 4.4e-10   NR XP_010075890.1 240206 g4624 i0 75.8 0.334459459459459 33 8 33.4 0 294 196 59 91 XP_010075890.1 PREDICTED: 40S ribosomal protein S27-like, partial [Pterocles gutturalis] diamond 99 62 1 Eukaryota Opisthokonta Metazoa Chordata Aves Pterocliformes Pteroclidae Pterocles Pterocles gutturalis
27849888 27849888 PRJNA345071_P_NODE_6824_length_262_cov_2.174603_g6784_i0 PRJNA345071 6824 262 2.174603 5.69745986 Metazoa 33208 Chordata Chordata 52 2.52e-5   NR XP_028595809.1 64176 g6784 i0 57.1 2.83969465648855 42 18 48.1 0 72 197 403 444 XP_028595809.1 uncharacterized protein LOC114602131 [Podarcis muralis] diamond 744 52 1 Eukaryota Opisthokonta Metazoa Chordata Lepidosauria Squamata Lacertidae Podarcis Podarcis muralis
28432837 28432837 PRJNA345071_P_NODE_6746_length_263_cov_2.426316_g6706_i0 PRJNA345071 6746 263 2.426316 6.38121108 Mobula hypostoma 723540 Chordata Chordata 70.1 1.08e-11   NR XP_062902004.1 723540 g6706 i0 42 1.9277566539924 88 48 98.1 2 2 259 22 108 XP_062902004.1 ubiquitin carboxyl-terminal hydrolase 47-like [Mobula hypostoma] diamond 507 70.1 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Myliobatidae Mobula Mobula hypostoma
29239376 29239376 PRJNA345071_P_NODE_4809_length_294_cov_1.140271_g4769_i0 PRJNA345071 4809 294 1.140271 3.35239674 Branchiostoma 7737 Chordata Chordata 86.3 1.93e-18   NR XP_035668886.1 7739 g4769 i0 46.2 2.79591836734694 91 49 92.9 0 2 274 37 127 XP_035668886.1 hematopoietic prostaglandin D synthase-like [Branchiostoma floridae] diamond 822 87 0.991954022988506 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
29474435 29474435 PRJNA345071_P_NODE_4630_length_297_cov_1.379464_g4590_i0 PRJNA345071 4630 297 1.379464 4.09700808 Branchiostoma floridae 7739 Chordata Chordata 120 3.83e-29   NR XP_035695553.1 7739 g4590 i0 62.1 1.91919191919192 95 36 96 0 3 287 194 288 XP_035695553.1 cilia- and flagella-associated protein 52-like [Branchiostoma floridae] diamond 570 120 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
29523482 29523482 PRJNA345071_P_NODE_11270_length_228_cov_2.012903_g11230_i0 PRJNA345071 11270 228 2.012903 4.5894188400000004 Metazoa 33208 Chordata Chordata 122 4.0199999999999995e-30   NR XP_016008630.2 9407 g11230 i0 72.4 179.986842105263 76 21 100 0 1 228 625 700 XP_016008630.2 NEDD4-like E3 ubiquitin-protein ligase WWP1 isoform X1 [Rousettus aegyptiacus] diamond 41037 123 0.991869918699187 Eukaryota Opisthokonta Metazoa Chordata Mammalia Chiroptera Pteropodidae Rousettus Rousettus aegyptiacus
29600726 29600726 PRJNA345071_P_NODE_8290_length_251_cov_0.865169_g8250_i0 PRJNA345071 8290 251 0.865169 2.17157419 Rattus norvegicus 10116 Chordata Chordata 75.1 6.3e-14   NR XP_038951261.1 10116 g8250 i0 69.2 7.02788844621514 52 16 62.2 0 251 96 194 245 XP_038951261.1 pre-mRNA-splicing factor 18 isoform X6 [Rattus norvegicus] diamond 1764 75.1 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Rodentia Muridae Rattus Rattus norvegicus
29712544 29712544 PRJNA345071_P_NODE_1950_length_404_cov_2.752266_g1910_i0 PRJNA345071 1950 404 2.752266 11.11915464 Chordata 7711 Chordata Chordata 135 1.8e-37   NR KYO47870.1 8496 g1910 i0 71.3 46.9009900990099 101 27 75 1 100 402 2 100 KYO47870.1 40S ribosomal protein S15 [Alligator mississippiensis] diamond 18948 136 0.992647058823529 Eukaryota Opisthokonta Metazoa Chordata   Crocodylia Alligatoridae Alligator Alligator mississippiensis
29997314 29997314 PRJNA345071_P_NODE_8051_length_251_cov_2.112360_g8011_i0 PRJNA345071 8051 251 2.11236 5.3020236 Branchiostoma 7737 Chordata Chordata 112 2.04e-30   NR XP_035679522.1 7739 g8011 i0 71.4 5.53386454183267 63 18 75.3 0 23 211 29 91 XP_035679522.1 40S ribosomal protein S29 [Branchiostoma floridae] diamond 1389 112 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
30011723 30011723 PRJNA345071_P_NODE_7871_length_252_cov_0.871508_g7831_i0 PRJNA345071 7871 252 0.871508 2.19620016 Mobula hypostoma 723540 Chordata Chordata 45.4 0.00443   NR XP_062886906.1 723540 g7831 i0 36.5 0.880952380952381 74 37 88.1 1 27 248 38 101 XP_062886906.1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 isoform X2 [Mobula hypostoma] diamond 222 45.4 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Myliobatidae Mobula Mobula hypostoma
30200910 30200910 PRJNA345071_P_NODE_8472_length_250_cov_0.881356_g8432_i0 PRJNA345071 8472 250 0.881356 2.20339 Pleurodeles waltl 8319 Chordata Chordata 43.9 0.0148   NR XP_069055767.1 8319 g8432 i0 43.2 0.528 44 25 52.8 0 239 108 57 100 XP_069055767.1 LRP2-binding protein isoform X2 [Pleurodeles waltl] diamond 132 43.9 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Caudata Salamandridae Pleurodeles Pleurodeles waltl
30548650 30548650 PRJNA345071_P_NODE_7673_length_253_cov_0.866667_g7633_i0 PRJNA345071 7673 253 0.866667 2.19266751 Pristis pectinata 685728 Chordata Chordata 81.6 8.79e-16   NR XP_051878695.1 685728 g7633 i0 45.1 18.296442687747 82 43 97.2 1 253 8 949 1028 XP_051878695.1 NPC intracellular cholesterol transporter 1 [Pristis pectinata] diamond 4629 81.6 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Rhinopristiformes Pristidae Pristis Pristis pectinata
31040085 31040085 PRJNA345071_P_NODE_4635_length_297_cov_1.357143_g4595_i0 PRJNA345071 4635 297 1.357143 4.03071471 Metazoa 33208 Chordata Chordata 124 2.18e-30   NR XP_043942230.1 7888 g4595 i0 67.3 30.8080808080808 110 25 100 1 297 1 633 742 XP_043942230.1 major vault protein [Protopterus annectens] diamond 9150 124 1 Eukaryota Opisthokonta Metazoa Chordata   Ceratodontiformes Protopteridae Protopterus Protopterus annectens
31876300 31876300 PRJNA345071_P_NODE_4317_length_304_cov_2.354978_g4277_i0 PRJNA345071 4317 304 2.354978 7.15913312 Branchiostoma floridae 7739 Chordata Chordata 70.5 8.98e-12   NR XP_035669233.1 7739 g4277 i0 73.9 5.99013157894737 46 11 45.4 1 304 167 273 317 XP_035669233.1 guanine nucleotide-binding protein subunit beta-2-like 1 [Branchiostoma floridae] diamond 1821 70.5 1 Eukaryota Opisthokonta Metazoa Chordata Leptocardii Amphioxiformes Branchiostomatidae Branchiostoma Branchiostoma floridae
32161389 32161389 PRJNA345071_P_NODE_7458_length_254_cov_1.723757_g7418_i0 PRJNA345071 7458 254 1.723757 4.37834278 Hymenochirus boettgeri 247094 Chordata Chordata 69.3 1.83e-11   NR KAG8452700.1 247094 g7418 i0 59.4 7.08661417322835 64 22 73.2 2 66 251 334 395 KAG8452700.1 hypothetical protein GDO86_004475 [Hymenochirus boettgeri] diamond 1800 69.3 1 Eukaryota Opisthokonta Metazoa Chordata Amphibia Anura Pipidae Hymenochirus Hymenochirus boettgeri
32414452 32414452 PRJNA345071_P_NODE_9319_length_247_cov_0.896552_g9279_i0 PRJNA345071 9319 247 0.896552 2.21448344 Cynocephalus volans 110931 Chordata Chordata 95.5 1.1e-20   NR XP_062935076.1 110931 g9279 i0 56.4 6.75303643724696 78 33 94.7 1 5 238 408 484 XP_062935076.1 LOW QUALITY PROTEIN: phospholipase B1, membrane-associated [Cynocephalus volans] diamond 1668 95.5 1 Eukaryota Opisthokonta Metazoa Chordata Mammalia Dermoptera Cynocephalidae Cynocephalus Cynocephalus volans
32431635 32431635 PRJNA345071_P_NODE_8679_length_249_cov_0.886364_g8639_i0 PRJNA345071 8679 249 0.886364 2.20704636 Metazoa 33208 Chordata Chordata 75.9 9.1e-14   NR CAK8684123.1 159417 g8639 i0 51.5 3.49397590361446 68 30 81.9 1 249 46 1578 1642 CAK8684123.1 unnamed protein product [Clavelina lepadiformis] diamond 870 76.3 0.99475753604194 Eukaryota Opisthokonta Metazoa Chordata Ascidiacea Aplousobranchia Clavelinidae Clavelina Clavelina lepadiformis
32558371 32558371 PRJNA345071_P_NODE_8959_length_248_cov_0.891429_g8919_i0 PRJNA345071 8959 248 0.891429 2.21074392 Myliobatiformes 117851 Chordata Chordata 49.7 1.41e-4   NR XP_059804115.1 79690 g8919 i0 64.7 4.18548387096774 34 12 41.1 0 90 191 254 287 XP_059804115.1 E3 ubiquitin ligase RNF157-like isoform X8 [Hypanus sabinus] diamond 1038 49.7 1 Eukaryota Opisthokonta Metazoa Chordata Chondrichthyes Myliobatiformes Dasyatidae Hypanus Hypanus sabinus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;