RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

19 rows where analysis = "diamond", bioproject = "PRJNA345071" and tax_phylum = "Actinomycetota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Actinomycetota · 19 ✖

tax_kingdom 1

bioproject 1

  • PRJNA345071 · 19 ✖

analysis 1

  • diamond · 19 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
9321445 9321445 PRJNA345071_P_NODE_8388_length_250_cov_0.881356_g8348_i0 PRJNA345071 8388 250 0.881356 2.20339 Propionibacteriaceae bacterium 2021380 Bacteria Bacteria 93.6 8.639999999999999e-23   NR HZA74741.1 2021380 g8348 i0 80.4 0.672 56 11 67.2 0 169 2 1 56 HZA74741.1 GNAT family N-acetyltransferase [Propionibacteriaceae bacterium] diamond 168 93.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Propionibacteriaceae   Propionibacteriaceae bacterium
19519273 19519273 PRJNA345071_P_NODE_9896_length_245_cov_0.906977_g9856_i0 PRJNA345071 9896 245 0.906977 2.22209365 Quadrisphaera sp. RL12-1S 2763011 Bacteria Bacteria 166 2.9399999999999995e-48   NR WP_186716213.1 2763011 g9856 i0 100 0.991836734693878 81 0 99.2 0 244 2 67 147 WP_186716213.1 NAD(P)/FAD-dependent oxidoreductase [Quadrisphaera sp. RL12-1S] diamond 243 166 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kineosporiales Kineosporiaceae Quadrisphaera Quadrisphaera sp. RL12-1S
26758127 26758127 PRJNA345071_P_NODE_9221_length_247_cov_0.896552_g9181_i0 PRJNA345071 9221 247 0.896552 2.21448344 Kribbella catacumbae 460086 Bacteria Bacteria 42 0.0381   NR WP_020385936.1 460086 g9181 i0 39.1 0.558704453441296 46 26 53.4 1 147 16 48 93 WP_020385936.1 hypothetical protein [Kribbella catacumbae] diamond 138 42 1 Bacteria   Bacillati Actinomycetota Actinomycetes Propionibacteriales Kribbellaceae Kribbella Kribbella catacumbae
26948086 26948086 PRJNA345071_P_NODE_10462_length_243_cov_0.917647_g10422_i0 PRJNA345071 10462 243 0.917647 2.22988221 Acidimicrobiales bacterium 2201156 Bacteria Bacteria 104 1.02e-26   NR HUF33663.1 2201156 g10422 i0 63 1 81 30 100 0 243 1 28 108 HUF33663.1 ribonuclease P protein component [Acidimicrobiales bacterium] diamond 243 104 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
26996883 26996883 PRJNA345071_P_NODE_11222_length_229_cov_2.807692_g11182_i0 PRJNA345071 11222 229 2.807692 6.42961468 Bacteria 2 Bacteria Bacteria 81.6 5.84e-16   NR WP_305995978.1 1663 g11182 i0 53.3 6.89082969432314 75 35 98.3 0 229 5 313 387 WP_305995978.1 MULTISPECIES: S8 family peptidase [Arthrobacter] diamond 1578 81.6 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Micrococcaceae Arthrobacter  
27137535 27137535 PRJNA345071_P_NODE_102_length_1210_cov_3.963940_g91_i0 PRJNA345071 102 1210 3.96394 47.963674 Gordonia sp. (in: high G+C Gram-positive bacteria) 84139 Bacteria Bacteria 45.8 0.0339   NR WP_291016901.1 84139 g91 i0 42.6 0.168595041322314 68 37 16.9 1 874 671 34 99 WP_291016901.1 hypothetical protein [Gordonia sp. (in: high G+C Gram-positive bacteria)] diamond 204 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Mycobacteriales Gordoniaceae Gordonia Gordonia sp. (in: high G+C Gram-positive bacteria)
27169346 27169346 PRJNA345071_P_NODE_10402_length_243_cov_1.058824_g10362_i0 PRJNA345071 10402 243 1.058824 2.57294232 Kitasatospora saccharophila 407973 Bacteria Bacteria 45.8 0.00228   NR WP_380276580.1 407973 g10362 i0 33.8 0.987654320987654 80 42 91.4 4 10 231 38 112 WP_380276580.1 haloacid dehalogenase-like hydrolase [Kitasatospora saccharophila] diamond 240 45.8 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Kitasatospora Kitasatospora saccharophila
27264494 27264494 PRJNA345071_P_NODE_3783_length_319_cov_1.845528_g3743_i0 PRJNA345071 3783 319 1.845528 5.88723432 Actinomycetes bacterium 1883427 Bacteria Bacteria 43.9 0.032   NR HKQ02952.1 1883427 g3743 i0 29.9 0.912225705329154 97 60 84.6 2 46 315 37 132 HKQ02952.1 ROK family protein [Actinomycetes bacterium] diamond 291 43.9 1 Bacteria   Bacillati Actinomycetota Actinomycetes       Actinomycetes bacterium
27832809 27832809 PRJNA345071_P_NODE_5984_length_274_cov_1.552239_g5944_i0 PRJNA345071 5984 274 1.552239 4.25313486 Frankia sp. Cppng1_Ct_nod 2897162 Bacteria Bacteria 45.4 0.00622   NR WP_250279560.1 2897162 g5944 i0 50 0.613138686131387 56 25 61.3 1 210 43 218 270 WP_250279560.1 GAF domain-containing protein [Frankia sp. Cppng1_Ct_nod] diamond 168 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Frankiales Frankiaceae Frankia Frankia sp. Cppng1_Ct_nod
27832813 27832813 PRJNA345071_P_NODE_9344_length_247_cov_0.896552_g9304_i0 PRJNA345071 9344 247 0.896552 2.21448344 Piscicoccus intestinalis 746033 Bacteria Bacteria 44.7 0.00781   NR WP_068430052.1 746033 g9304 i0 46.3 0.497975708502024 41 22 49.8 0 210 88 205 245 WP_068430052.1 universal stress protein [Piscicoccus intestinalis] diamond 123 44.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micrococcales Dermatophilaceae Piscicoccus Piscicoccus intestinalis
27959142 27959142 PRJNA345071_P_NODE_4245_length_306_cov_1.721030_g4205_i0 PRJNA345071 4245 306 1.72103 5.2663518 Micromonospora sp. NPDC 1876 Bacteria Bacteria 45.1 0.0126   NR WP_363747546.1 3155281 g4205 i0 47.7 0.637254901960784 65 31 63.7 1 261 67 483 544 WP_363747546.1 SCO7613 C-terminal domain-containing membrane protein [Micromonospora sp. NPDC051196] diamond 195 45.1 1 Bacteria   Bacillati Actinomycetota Actinomycetes Micromonosporales Micromonosporaceae Micromonospora Micromonospora sp. NPDC051196
28906163 28906163 PRJNA345071_P_NODE_9308_length_247_cov_0.896552_g9268_i0 PRJNA345071 9308 247 0.896552 2.21448344 Saccharopolyspora halophila 405551 Bacteria Bacteria 45.4 0.00403   NR WP_344126342.1 405551 g9268 i0 35.2 0.862348178137652 71 43 82.6 1 21 224 74 144 WP_344126342.1 NAD(P)H-quinone oxidoreductase [Saccharopolyspora halophila] diamond 213 45.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Saccharopolyspora Saccharopolyspora halophila
29253446 29253446 PRJNA345071_P_NODE_10089_length_244_cov_1.520468_g10049_i0 PRJNA345071 10089 244 1.520468 3.70994192 Coriobacteriia bacterium 2052159 Bacteria Bacteria 43.5 0.0197   NR MEA5075349.1 2052159 g10049 i0 59 0.479508196721311 39 16 48 0 240 124 106 144 MEA5075349.1 TMEM43 family protein [Coriobacteriia bacterium] diamond 117 43.5 1 Bacteria   Bacillati Actinomycetota Coriobacteriia       Coriobacteriia bacterium
30074594 30074594 PRJNA345071_P_NODE_8132_length_251_cov_0.876404_g8092_i0 PRJNA345071 8132 251 0.876404 2.19977404 Actinomycetospora aeridis 3129231 Bacteria Bacteria 43.5 0.0218   NR WP_337713678.1 3129231 g8092 i0 35.6 1.41035856573705 59 37 70.5 1 197 21 348 405 WP_337713678.1 sensor domain-containing diguanylate cyclase [Actinomycetospora aeridis] diamond 354 43.5 1 Bacteria   Bacillati Actinomycetota Actinomycetes Pseudonocardiales Pseudonocardiaceae Actinomycetospora Actinomycetospora aeridis
30439684 30439684 PRJNA345071_P_NODE_953_length_540_cov_2.111349_g913_i0 PRJNA345071 953 540 2.111349 11.4012846 Actinomycetota 201174 Bacteria Bacteria 119 2.2600000000000003e-27   NR HZL48502.1 2586742 g913 i0 43.8 2.42222222222222 146 74 77.8 3 540 121 89 232 HZL48502.1 putative Ig domain-containing protein [Solirubrobacteraceae bacterium] diamond 1308 119 1 Bacteria   Bacillati Actinomycetota Thermoleophilia Solirubrobacterales Solirubrobacteraceae   Solirubrobacteraceae bacterium
30643311 30643311 PRJNA345071_P_NODE_9853_length_245_cov_0.906977_g9813_i0 PRJNA345071 9853 245 0.906977 2.22209365 Streptomyces sp. NPDC 1931 Bacteria Bacteria 47.4 9.26e-4   NR WP_384892314.1 3346691 g9813 i0 34.2 0.96734693877551 79 47 95.5 2 1 234 472 546 WP_384892314.1 3'-5' exonuclease, partial [Streptomyces sp. NPDC059003] diamond 237 47.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NPDC059003
31419119 31419119 PRJNA345071_P_NODE_8736_length_249_cov_0.886364_g8696_i0 PRJNA345071 8736 249 0.886364 2.20704636 Bacillati 1783272 Bacteria Bacteria 67.4 4.42e-11   NR WP_066930529.1 1621259 g8696 i0 51.5 2.50602409638554 68 31 80.7 2 2 202 66 132 WP_066930529.1 MOSC domain-containing protein [Streptomyces sp. NBRC 110611] diamond 624 67.4 1 Bacteria   Bacillati Actinomycetota Actinomycetes Kitasatosporales Streptomycetaceae Streptomyces Streptomyces sp. NBRC 110611
31514340 31514340 PRJNA345071_P_NODE_7756_length_253_cov_0.866667_g7716_i0 PRJNA345071 7756 253 0.866667 2.19266751 FCB group 1783270 Bacteria Bacteria 99.8 1.9499999999999994e-23   NR MCB0958566.1 2201156 g7716 i0 58 3.86561264822134 81 32 96 1 253 11 172 250 MCB0958566.1 PqqD family peptide modification chaperone [Acidimicrobiales bacterium] diamond 978 99.8 1 Bacteria   Bacillati Actinomycetota Acidimicrobiia Acidimicrobiales     Acidimicrobiales bacterium
31623344 31623344 PRJNA345071_P_NODE_9516_length_246_cov_0.901734_g9476_i0 PRJNA345071 9516 246 0.901734 2.21826564 Actinocorallia herbida 58109 Bacteria Bacteria 42.7 0.0206   NR WP_123667464.1 58109 g9476 i0 40.4 0.573170731707317 47 26 54.9 1 157 23 110 156 WP_123667464.1 GNAT family N-acetyltransferase [Actinocorallia herbida] diamond 141 42.7 1 Bacteria   Bacillati Actinomycetota Actinomycetes Streptosporangiales Thermomonosporaceae Actinocorallia Actinocorallia herbida

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;