RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_phylum = "Thermoproteota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoproteota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27408240 27408240 PRJNA340009_P_NODE_45123_length_191_cov_1.866197_g44816_i0 PRJNA340009 45123 191 1.866197 3.56443627 Thermoprotei 183924 Archaea Archaea 47.4 3.99e-4   NR WP_014737175.1 1200300 g44816 i0 55.6 4.30366492146597 36 16 56.5 0 191 84 232 267 WP_014737175.1 BtpA/SgcQ family protein [Thermogladius calderae] diamond 822 47.8 0.99163179916318 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Thermogladius Thermogladius calderae
29032862 29032862 PRJNA340009_P_NODE_53808_length_178_cov_0.914729_g53501_i0 PRJNA340009 53808 178 0.914729 1.62821762 Thermoproteota archaeon 2056631 Archaea Archaea 47.4 3.74e-4   NR NLE05703.1 2056631 g53501 i0 41.8 2.74719101123596 55 32 92.7 0 168 4 1885 1939 NLE05703.1 hypothetical protein [Thermoproteota archaeon] diamond 489 47.4 1 Archaea   Thermoproteati Thermoproteota         Thermoproteota archaeon
31971267 31971267 PRJNA340009_P_NODE_62158_length_167_cov_0.864407_g61851_i0 PRJNA340009 62158 167 0.864407 1.44355969 Ignisphaera sp. 2268142 Archaea Archaea 48.5 2e-5   NR MCI4435877.1 2268142 g61851 i0 80.8 0.467065868263473 26 5 46.7 0 81 4 1 26 MCI4435877.1 MazG-like family protein [Ignisphaera sp.] diamond 78 48.5 1 Archaea   Thermoproteati Thermoproteota Thermoprotei Desulfurococcales Desulfurococcaceae Ignisphaera Ignisphaera sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;