RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_phylum = "Pisuviricota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Pisuviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28748467 28748467 PRJNA340009_P_NODE_68907_length_164_cov_0.886957_g68600_i0 PRJNA340009 68907 164 0.886957 1.45460948 Iflaviridae sp. 1955145 Viruses Viruses 48.1 1.59e-4   NR XCO48761.1 1955145 g68600 i0 45.2 0.768292682926829 42 23 76.8 0 1 126 319 360 XCO48761.1 MAG: putative ORF1 protein, partial [Iflaviridae sp.] diamond 126 48.1 1 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Iflaviridae   Iflaviridae sp.
30660662 30660662 PRJNA340009_P_NODE_70193_length_163_cov_23.973684_g69886_i0 PRJNA340009 70193 163 23.973684 39.07710492 Viruses 10239 Viruses Viruses 85.9 7.99e-18   NR UUV42151.1 2971793 g69886 i0 69.2 1.93251533742331 52 16 95.7 0 2 157 1405 1456 UUV42151.1 MAG: nonstructural protein [Macrobrachium rosenbergii virus 8] diamond 315 86.7 0.990772779700115 Viruses   Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Dicistroviridae   Macrobrachium rosenbergii virus 8
31623305 31623305 PRJNA340009_P_NODE_64536_length_166_cov_0.871795_g64229_i0 PRJNA340009 64536 166 0.871795 1.4471797 Flumine Astrovirus 22 2940951 Viruses Viruses 47 4.15e-4   NR UQB75984.1 2940951 g64229 i0 42.6 0.975903614457831 54 30 97.6 1 166 5 213 265 UQB75984.1 RNA-dependent RNA polymerase [Flumine Astrovirus 22] diamond 162 47 1 Viruses   Orthornavirae Pisuviricota Stelpaviricetes Stellavirales Astroviridae   Flumine Astrovirus 22

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;