RNAquarium Metadata Server
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contig_metadata

3 rows where analysis = "diamond", bioproject = "PRJNA340009" and tax_phylum = "Discosea"

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tax_superkingdom 1

tax_phylum 1

  • Discosea · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA340009 · 3 ✖

analysis 1

  • diamond · 3 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18243635 18243635 PRJNA340009_P_NODE_28435_length_232_cov_2.704918_g28128_i0 PRJNA340009 28435 232 2.704918 6.27540976 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 66.6 1.14e-10   NR XP_004356655.1 1257118 g28128 i0 63.2 0.737068965517241 57 21 73.7 0 32 202 327 383 XP_004356655.1 uncharacterized protein ACA1_174150 [Acanthamoeba castellanii str. Neff] diamond 171 66.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29474417 29474417 PRJNA340009_P_NODE_76770_length_161_cov_0.910714_g76463_i0 PRJNA340009 76770 161 0.910714 1.46624954 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 47 3.9e-4   NR XP_004336759.1 1257118 g76463 i0 48.9 0.875776397515528 47 24 87.6 0 16 156 33 79 XP_004336759.1 peptidase family M3 protein, partial [Acanthamoeba castellanii str. Neff] diamond 141 47 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32666840 32666840 PRJNA340009_P_NODE_5940_length_445_cov_30.825758_g5633_i0 PRJNA340009 5940 445 30.825758 137.1746231 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 85.9 1.13e-18   NR XP_004335921.1 1257118 g5633 i0 56.7 0.451685393258427 67 29 45.2 0 340 140 5 71 XP_004335921.1 uncharacterized protein ACA1_364340 [Acanthamoeba castellanii str. Neff] diamond 201 85.9 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;